myRT

myRT report for GCA_001183585.1_ASM118358v1

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Seq: LDJF01000019.1 Pseudomonas putida strain JLR11, whole genome shotgun sequence (529984 bp)
Overview 1 RT 1: 63293-67297 bp 2 RT 2: 153709-159793 bp Neighborhood of RT #1 [63293, 67323] RVT-GII Tsi6 Ntox46 Neighborhood of RT #2 [153709, 159867] LysR oxido_grp_1 RVT-GII GIIM PRK10605 Tas Feature: gene Location: 63293-63991 bp Feature: gene Location: 64383-64694 bp Feature: gene Location: 65104-65403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65107-65239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 07-65239 bp Feature: gene Location: 65954-66250 bp Feature: domain Description: Tsi6 Location: 65969-66215 bp Feature: domain Description: Tsi6 Location: 65969-6621 5 bp Feature: gene Location: 66247-67323 bp Feature: domain Description: Ntox46 Location: 66829-67297 bp Feature: domain Description: Ntox46 Location: 66829-67297 bp Feature: gene Location: 153709-154620 bp Feature: domain Description: LysR Location: 153733-154594 bp Feature: domain Description: LysR Location: 1 53733-1 54594 bp Feature: gene Location: 154721-155701 bp Feature: domain Description: oxido_grp_1 Location: 154733-155684 bp Feature: domain Description: oxido_grp_1 Location: 1 54733-1 55684 bp Feature: gene Location: 155777-157198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156134-156749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 561 34-1 56749 bp Feature: domain Description: GIIM Note: maturase Location: 156803-157031 bp Feature: domain Description: GIIM Note: maturase Location: 1 56803-1 57031 bp Feature: gene Location: 157664-158761 bp Feature: domain Description: PRK10605 Location: 157670-158750 bp Feature: domain Description: PRK1 0605 Location: 1 57670-1 58750 bp Feature: gene Location: 158857-159867 bp Feature: domain Description: Tas Location: 158860-159793 bp Feature: domain Description: Tas Location: 1 58860-1 59793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tsi6 (pfam18660), Ntox46 (pfam15538), LysR (COG0583), oxido_grp_1 (TIGR03558), GIIM (pfam08388), PRK10605 (N-ethylmaleimide reductase; Provisional), Tas (COG0667)

Seq: LDJF01000006.1 Pseudomonas putida strain JLR11, whole genome shotgun sequence (71308 bp)
Overview 1 RT 1: 66266-71058 bp Neighborhood of RT #1 [66266, 71150] RhtB DUF4223 RVT-GII GIIM PRK05257 Feature: gene Location: 66266-66883 bp Feature: domain Description: RhtB Location: 66278-66875 bp Feature: domain Description: RhtB Location: 662 78-66875 bp Feature: gene Location: 67074-67265 bp Feature: domain Description: DUF4223 Location: 67077-67245 bp Feature: domain Description: DUF42 2 3 Location: 67077-672 45 bp Feature: gene Location: 67770-69191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68127-68742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6812 7-68742 bp Feature: domain Description: GIIM Note: maturase Location: 68796-69024 bp Feature: domain Description: GIIM Note: maturase Location: 68796-6902 4 bp Feature: gene Location: 69513-71150 bp Feature: domain Description: PRK05257 Location: 69588-71058 bp Feature: domain Description: PRK052 57 Location: 69588-71058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhtB (COG1280), DUF4223 (pfam13978), RVT-GII, GIIM (pfam08388), PRK05257 (malate:quinone oxidoreductase; Validated)

Seq: LDJF01000008.1 Pseudomonas putida strain JLR11, whole genome shotgun sequence (566865 bp)
Overview 1 RT 1: 381684-389136 bp Neighborhood of RT #1 [381684, 389147] nlpD EnvC PRK05657 RVT-GII GIIM PreA DUF3470 mutS1 Feature: gene Location: 381684-382541 bp Feature: domain Description: nlpD Location: 381807-382035 bp Feature: domain Description: nlpD Location: 3 81807-3 8203 5 bp Feature: domain Description: EnvC Location: 382134-382530 bp Feature: domain Description: EnvC Location: 3 8213 4-3 8253 0 bp Feature: gene Location: 382650-383657 bp Feature: domain Description: PRK05657 Location: 382710-383652 bp Feature: domain Description: PRK05657 Location: 3 82710-3 83 652 bp Feature: gene Location: 384132-385553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384489-385104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 84489-3 85104 bp Feature: domain Description: GIIM Note: maturase Location: 385158-385386 bp Feature: domain Description: GIIM Note: maturase Location: 3 85158-3 853 86 bp Feature: gene Location: 386110-386433 bp Feature: domain Description: PreA Location: 386122-386296 bp Feature: domain Description: PreA Location: 3 86122-3 86296 bp Feature: domain Description: DUF3470 Location: 386308-386431 bp Feature: domain Description: DUF3 470 Location: 3 863 08-3 8643 1 bp Feature: gene Location: 386574-389147 bp Feature: domain Description: mutS1 Location: 386595-389136 bp Feature: domain Description: mutS1 Location: 3 86595-3 8913 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nlpD (PRK10871), EnvC (COG4942), PRK05657 (RNA polymerase sigma factor RpoS; Validated), RVT-GII, GIIM (pfam08388), PreA (COG1146), DUF3470 (pfam11953), mutS1 (TIGR01070)

Seq: LDJF01000024.1 Pseudomonas putida strain JLR11, whole genome shotgun sequence (366512 bp)
Overview 1 RT 1: 173471-180131 bp 2 RT 2: 219916-224257 bp Neighborhood of RT #1 [173471, 180145] PBP2_phosphate_like_1 OmpA_C-like PRK06116 RVT-GII GIIM galU CytC Neighborhood of RT #2 [219916, 224310] Phage_TAC_7 Tail_tube RVT-GII GIIM COG4386 DUF2635 Feature: gene Location: 173471-174778 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 173540-174362 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 17354 0-174 362 bp Feature: domain Description: OmpA_C-like Location: 174461-174770 bp Feature: domain Description: OmpA_C-like Location: 174 4 61-174 770 bp Feature: gene Location: 174782-176137 bp Feature: domain Description: PRK06116 Location: 174785-176123 bp Feature: domain Description: PRK06116 Location: 174 785-176123 bp Feature: gene Location: 176260-177681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176617-177232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176617-177232 bp Feature: domain Description: GIIM Note: maturase Location: 177286-177514 bp Feature: domain Description: GIIM Note: maturase Location: 177286-177514 bp Feature: gene Location: 178155-178994 bp Feature: domain Description: galU Location: 178164-178947 bp Feature: domain Description: galU Location: 178164 -17894 7 bp Feature: gene Location: 179231-180145 bp Feature: domain Description: CytC Location: 179294-180131 bp Feature: domain Description: CytC Location: 179294 -180131 bp Feature: gene Location: 219916-220212 bp Feature: domain Description: Phage_TAC_7 Location: 219931-220180 bp Feature: domain Description: Phage_TAC_7 Location: 219931-220180 bp Feature: gene Location: 220209-220556 bp Feature: domain Description: Tail_tube Location: 220218-220548 bp Feature: domain Description: Tail_tube Location: 220218-22054 8 bp Feature: gene Location: 220729-222150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221086-221701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221086-221701 bp Feature: domain Description: GIIM Note: maturase Location: 221755-221983 bp Feature: domain Description: GIIM Note: maturase Location: 221755-221983 bp Feature: gene Location: 222620-224107 bp Feature: domain Description: COG4386 Location: 222623-224081 bp Feature: domain Description: COG4 386 Location: 222623-224 081 bp Feature: gene Location: 224107-224310 bp Feature: domain Description: DUF2635 Location: 224125-224257 bp Feature: domain Description: DUF2635 Location: 224 125-224 257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_phosphate_like_1 (cd13653), OmpA_C-like (cl30079), PRK06116 (glutathione reductase; Validated), RVT-GII, GIIM (pfam08388), galU (TIGR01099), CytC (COG3258), Phage_TAC_7 (pfam10109), Tail_tube (pfam10618), COG4386 (Mu-like prophage tail sheath protein gpL )
DUF2635 (pfam10948)

Seq: LDJF01000005.1 Pseudomonas putida strain JLR11, whole genome shotgun sequence (645716 bp)
Overview 1 RT 1: 36491-42725 bp Neighborhood of RT #1 [36491, 43252] PulF N_methyl Pilin RVT-GII GIIM CSP_CDS CSP_CDS Feature: gene Location: 36491-37699 bp Feature: domain Description: PulF Location: 36512-37697 bp Feature: domain Description: PulF Location: 365 12-37697 bp Feature: gene Location: 37916-38326 bp Feature: domain Description: N_methyl Location: 37919-37997 bp Feature: domain Description: N_methyl Location: 37919-37997 bp Feature: domain Description: Pilin Location: 38021-38318 bp Feature: domain Description: Pilin Location: 38021-38318 bp Feature: gene Location: 38973-40394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39330-39945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39330-39945 bp Feature: domain Description: GIIM Note: maturase Location: 39999-40227 bp Feature: domain Description: GIIM Note: maturase Location: 39999-40227 bp Feature: gene Location: 40668-41408 bp Feature: domain Description: CSP_CDS Location: 40707-40881 bp Feature: domain Description: CSP_CDS Location: 40707-40881 bp Feature: gene Location: 42512-43252 bp Feature: domain Description: CSP_CDS Location: 42551-42725 bp Feature: domain Description: CSP_CDS Location: 425 5 1-42725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulF (COG1459), N_methyl (pfam07963), Pilin (pfam00114), RVT-GII, GIIM (pfam08388), CSP_CDS (cd04458)