myRT

myRT report for GCA_001183965.1_ASM118396v1

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Seq: LFZV01000001.1 Bacillus sp. FJAT-27916 Scaffold1, whole genome shotgun sequence (4153082 bp)
Overview 1 RT 1: 293997-298763 bp 2 RT 2: 695708-703680 bp 3 RT 3: 1120196-1128491 bp 4 RT 4: 1235586-1243855 bp 5 RT 5: 1800681-1807944 bp 6 RT 6: 1813325-1815487 bp 7 RT 7: 1935952-1941588 bp 8 RT 8: 2651919-2658437 bp 9 RT 9: 3321643-3328020 bp 10 RT 10: 4148061-4152248 bp Neighborhood of RT #1 [293997, 298780] RVT-GII GIIM TarS_C1 Glyphos_transf Glyphos_transf Neighborhood of RT #2 [695708, 703680] Acetyltransf_1 MTAN RVT-GII HNHc Neighborhood of RT #3 [1120196, 1128499] dnaG PRK09210 RVT-GII GIIM RVT-GII GIIM Cytochrome_CBB3 NosY Neighborhood of RT #4 [1235586, 1243878] AcoB AceF RVT-GII GIIM MM_CoA_mutase_beta PRK09426 Neighborhood of RT #5 [1800681, 1807970] Dut RVT-GII HNHc PHA02517 Neighborhood of RT #6 [1813325, 1815573] RVT-GII GIIM Neighborhood of RT #7 [1935952, 1941617] lys_2_3_AblA YokU_near_AblA RVT-GII GIIM HAD_Pase Neighborhood of RT #8 [2651919, 2658448] PRK05678 sucC RVT-GII GIIM rnhB rbgA Neighborhood of RT #9 [3321643, 3328020] PRK01388 MFS_DtpA_like RVT-GII GIIM spore_yhbH Neighborhood of RT #10 [4148061, 4152248] DUF3021 DUF4181 RVT-GII GIIM HTH_17 Feature: gene Location: 293997-295382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294315-294930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29431 5-294930 bp Feature: domain Description: GIIM Note: maturase Location: 294990-295200 bp Feature: domain Description: GIIM Note: maturase Location: 294990-295200 bp Feature: gene Location: 295457-298780 bp Feature: domain Description: TarS_C1 Location: 295982-296411 bp Feature: domain Description: TarS_C1 Location: 295982-29641 1 bp Feature: domain Description: Glyphos_transf Location: 296480-297530 bp Feature: domain Description: Glyphos_transf Location: 296480-297530 bp Feature: domain Description: Glyphos_transf Location: 297662-298763 bp Feature: domain Description: Glyphos_transf Location: 297662-298763 bp Feature: gene Location: 695708-696232 bp Feature: domain Description: Acetyltransf_1 Location: 695849-696149 bp Feature: domain Description: Acetyltransf_1 Location: 695849-6961 49 bp Feature: gene Location: 696386-697057 bp Feature: domain Description: MTAN Location: 696392-696986 bp Feature: domain Description: MTAN Location: 696392-696986 bp Feature: gene Location: 697639-699402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697897-698596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697897-698596 bp Feature: domain Description: HNHc Note: nucleases Location: 699151-699289 bp Feature: domain Description: HNHc Note: nucleases Location: 6991 51 -699289 bp Feature: gene Location: 700366-701886 bp Feature: gene Location: 702241-703680 bp Feature: gene Location: 1120196-1122010 bp Feature: domain Description: dnaG Location: 1120211-1121948 bp Feature: domain Description: dnaG Location: 1 1 2021 1 -1 1 21 948 bp Feature: gene Location: 1122049-1123185 bp Feature: domain Description: PRK09210 Location: 1122100-1123183 bp Feature: domain Description: PRK0921 0 Location: 1 1 221 00-1 1 231 83 bp Feature: gene Location: 1123530-1124864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123797-1124412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 23797-1 1 2441 2 bp Feature: domain Description: GIIM Note: maturase Location: 1124472-1124682 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 24472-1 1 24682 bp Feature: gene Location: 1125412-1126650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1125616-1126273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2561 6-1 1 26273 bp Feature: domain Description: GIIM Note: maturase Location: 1126354-1126576 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 26354-1 1 26576 bp Feature: gene Location: 1127070-1127426 bp Feature: domain Description: Cytochrome_CBB3 Location: 1127217-1127412 bp Feature: domain Description: Cytochrome_CBB3 Location: 1 1 2721 7-1 1 2741 2 bp Feature: gene Location: 1127507-1128499 bp Feature: domain Description: NosY Location: 1127516-1128491 bp Feature: domain Description: NosY Location: 1 1 2751 6-1 1 28491 bp Feature: gene Location: 1235586-1236569 bp Feature: domain Description: AcoB Location: 1235598-1236564 bp Feature: domain Description: AcoB Location: 1 235598-1 236564 bp Feature: gene Location: 1236594-1237865 bp Feature: domain Description: AceF Location: 1236606-1237836 bp Feature: domain Description: AceF Location: 1 236606-1 237836 bp Feature: gene Location: 1238462-1239727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238660-1239278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 238660-1 239278 bp Feature: domain Description: GIIM Note: maturase Location: 1239326-1239533 bp Feature: domain Description: GIIM Note: maturase Location: 1 239326-1 239533 bp Feature: gene Location: 1239959-1241722 bp Feature: domain Description: MM_CoA_mutase_beta Location: 1239980-1241234 bp Feature: domain Description: MM_CoA_mutase_beta Location: 1 239980-1 241 234 bp Feature: gene Location: 1241719-1243878 bp Feature: domain Description: PRK09426 Location: 1241731-1243855 bp Feature: domain Description: PRK09426 Location: 1 241 731 -1 243855 bp Feature: gene Location: 1800681-1801142 bp Feature: domain Description: Dut Location: 1800720-1801134 bp Feature: domain Description: Dut Location: 1 800720-1 801 1 34 bp Feature: gene Location: 1803121-1803360 bp Feature: gene Location: 1804523-1806286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1804781-1805480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 804781 -1 805480 bp Feature: domain Description: HNHc Note: nucleases Location: 1806035-1806173 bp Feature: domain Description: HNHc Note: nucleases Location: 1 806035-1 8061 73 bp Feature: gene Location: 1806640-1807068 bp Feature: gene Location: 1807128-1807970 bp Feature: domain Description: PHA02517 Location: 1807158-1807944 bp Feature: domain Description: PHA0251 7 Location: 1 8071 58-1 807944 bp Feature: gene Location: 1813325-1813774 bp Feature: gene Location: 1814260-1815573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814500-1815193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 4500-1 81 51 93 bp Feature: domain Description: GIIM Note: maturase Location: 1815283-1815487 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 5283-1 81 5487 bp Feature: gene Location: 1935952-1937358 bp Feature: domain Description: lys_2_3_AblA Location: 1936015-1937230 bp Feature: domain Description: lys_2_3_AblA Location: 1 93601 5-1 937230 bp Feature: gene Location: 1937361-1937642 bp Feature: domain Description: YokU_near_AblA Location: 1937376-1937637 bp Feature: domain Description: YokU_near_AblA Location: 1 937376-1 937637 bp Feature: gene Location: 1938053-1939438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938371-1938986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 938371 -1 938986 bp Feature: domain Description: GIIM Note: maturase Location: 1939046-1939256 bp Feature: domain Description: GIIM Note: maturase Location: 1 939046-1 939256 bp Feature: gene Location: 1939936-1940409 bp Feature: gene Location: 1940796-1941617 bp Feature: domain Description: HAD_Pase Location: 1940811-1941588 bp Feature: domain Description: HAD_Pase Location: 1 94081 1 -1 941 588 bp Feature: gene Location: 2651919-2652821 bp Feature: domain Description: PRK05678 Location: 2651922-2652789 bp Feature: domain Description: PRK05678 Location: 2651 922-2652789 bp Feature: gene Location: 2652839-2653999 bp Feature: domain Description: sucC Location: 2652842-2653994 bp Feature: domain Description: sucC Location: 2652842-2653994 bp Feature: gene Location: 2655031-2656013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2655229-2655847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2655229-2655847 bp Feature: domain Description: GIIM Note: maturase Location: 2655895-2656009 bp Feature: domain Description: GIIM Note: maturase Location: 2655895-2656009 bp Feature: gene Location: 2656715-2657509 bp Feature: domain Description: rnhB Location: 2656895-2657468 bp Feature: domain Description: rnhB Location: 2656895-2657468 bp Feature: gene Location: 2657588-2658448 bp Feature: domain Description: rbgA Location: 2657591-2658437 bp Feature: domain Description: rbgA Location: 2657591 -2658437 bp Feature: gene Location: 3321643-3322875 bp Feature: domain Description: PRK01388 Location: 3321658-3322870 bp Feature: domain Description: PRK01 388 Location: 3321 658-3322870 bp Feature: gene Location: 3323227-3324603 bp Feature: domain Description: MFS_DtpA_like Location: 3323269-3324577 bp Feature: domain Description: MFS_DtpA_like Location: 3323269-3324577 bp Feature: gene Location: 3324851-3325845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3325049-3325667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3325049-3325667 bp Feature: domain Description: GIIM Note: maturase Location: 3325715-3325841 bp Feature: domain Description: GIIM Note: maturase Location: 332571 5-3325841 bp Feature: gene Location: 3326450-3327619 bp Feature: domain Description: spore_yhbH Location: 3326477-3327587 bp Feature: domain Description: spore_yhbH Location: 3326477-3327587 bp Feature: gene Location: 3327826-3328020 bp Feature: gene Location: 4148061-4148453 bp Feature: domain Description: DUF3021 Location: 4148112-4148427 bp Feature: domain Description: DUF3021 Location: 41 481 1 2-41 48427 bp Feature: gene Location: 4148610-4148990 bp Feature: domain Description: DUF4181 Location: 4148667-4148967 bp Feature: domain Description: DUF41 81 Location: 41 48667-41 48967 bp Feature: gene Location: 4149466-4150779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4149706-4150399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 49706-41 50399 bp Feature: domain Description: GIIM Note: maturase Location: 4150489-4150693 bp Feature: domain Description: GIIM Note: maturase Location: 41 50489-41 50693 bp Feature: gene Location: 4151488-4151847 bp Feature: domain Description: HTH_17 Location: 4151629-4151818 bp Feature: domain Description: HTH_1 7 Location: 41 51 629-41 51 81 8 bp Feature: gene Location: 4152024-4152248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TarS_C1 (pfam18674), Glyphos_transf (pfam04464), Acetyltransf_1 (pfam00583), MTAN (cd09008), HNHc (smart00507), dnaG (TIGR01391), PRK09210 (RNA polymerase sigma factor RpoD; Validated), Cytochrome_CBB3 (pfam13442)
NosY (COG1277), AcoB (COG0022), AceF (COG0508), MM_CoA_mutase_beta (cd03677), PRK09426 (methylmalonyl-CoA mutase; Reviewed), Dut (COG0756), PHA02517 (putative transposase OrfB; Reviewed), lys_2_3_AblA (TIGR03820), YokU_near_AblA (TIGR03829), HAD_Pase (cd16418)
PRK05678 (succinyl-CoA synthetase subunit alpha; Validated), sucC (PRK00696), rnhB (PRK14551), rbgA (PRK09563), PRK01388 (arginine deiminase; Provisional), MFS_DtpA_like (cd17346), spore_yhbH (TIGR02877), DUF3021 (pfam11457), DUF4181 (pfam13789), HTH_17 (pfam12728)