myRT

myRT report for GCA_001184055.1_ASM118405v1

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Seq: LAJP01000148.1 Shigella flexneri 3a strain BS1038 BS1038_c148, whole genome shotgun sequence (8370 bp)
Overview 1 RT 1: 5658-8369 bp Neighborhood of RT #1 [5658, 8369] COG3547 RVT-GII Feature: gene Location: 5658-6143 bp Feature: domain Description: COG3547 Location: 5676-6129 bp Feature: domain Description: COG3547 Location: 5676-61 29 bp Feature: gene Location: 6239-6406 bp Feature: gene Location: 6679-7650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6865-7519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6865-751 9 bp Feature: gene Location: 7738-7875 bp Feature: gene Location: 8130-8369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: LAJP01000046.1 Shigella flexneri 3a strain BS1038 BS1038_c46, whole genome shotgun sequence (4852 bp)
Overview 1 RT 1: 1-4417 bp Neighborhood of RT #1 [1, 4419] PHA02517 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-327 bp Feature: domain Description: PHA02517 Location: 4-310 bp Feature: domain Description: PHA02 517 Location: 4-310 bp Feature: gene Location: 340-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-12 97 bp Feature: gene Location: 1766-2293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772-1916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772 -1916 bp Feature: domain Description: GIIM Note: maturase Location: 2000-2216 bp Feature: domain Description: GIIM Note: maturase Location: 2 000-2 2 16 bp Feature: gene Location: 2646-2888 bp Feature: gene Location: 2800-4419 bp Feature: domain Description: ushA Location: 2815-4417 bp Feature: domain Description: ushA Location: 2 815-4417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ushA (PRK09558)