myRT

myRT report for GCA_001184155.1_ASM118415v1

Download annotations/find similar RTs

Seq: LAJW01000102.1 Shigella flexneri 3a strain BS1061 BS1061_c102, whole genome shotgun sequence (42623 bp)
Overview 1 RT 1: 39911-42622 bp Neighborhood of RT #1 [39911, 42622] COG3547 RVT-GII Feature: gene Location: 39911-40396 bp Feature: domain Description: COG3547 Location: 39929-40382 bp Feature: domain Description: COG3547 Location: 39929-40382 bp Feature: gene Location: 40545-40718 bp Feature: gene Location: 40932-41903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41118-41772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 8-41 772 bp Feature: gene Location: 42383-42622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: LAJW01000366.1 Shigella flexneri 3a strain BS1061 BS1061_c366, whole genome shotgun sequence (4771 bp)
Overview 1 RT 1: 1996-4752 bp Neighborhood of RT #1 [1996, 4769] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 1996-2238 bp Feature: gene Location: 2410-2565 bp Feature: gene Location: 2591-3118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2597-2741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 597-2 741 bp Feature: domain Description: GIIM Note: maturase Location: 2825-3041 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 5-3041 bp Feature: gene Location: 3128-3400 bp Feature: gene Location: 3417-4544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3717-4374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3717-4374 bp Feature: gene Location: 4557-4769 bp Feature: domain Description: Tra5 Location: 4560-4752 bp Feature: domain Description: Tra5 Location: 4560-4752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)