myRT

myRT report for GCA_001185775.1_Kleb_pneu_CHS196_V1

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Seq: KQ236825.1 Klebsiella pneumoniae strain CHS196 genomic scaffold aetyD-supercont1.1, whole genome shotgun sequence (4973556 bp)
Overview 1 RT 1: 584408-587815 bp 2 RT 2: 1029664-1035269 bp 3 RT 3: 1373155-1378573 bp 4 RT 4: 1556652-1562517 bp 5 RT 5: 1940126-1945608 bp 6 RT 6: 3067220-3073703 bp Neighborhood of RT #1 [584408, 587916] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1029664, 1035295] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1373155, 1378575] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1556652, 1562519] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [1940126, 1945616] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Neighborhood of RT #6 [3067220, 3073705] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 584408-585139 bp Feature: domain Description: Laminin_G_3 Location: 584729-585083 bp Feature: domain Description: Laminin_G_3 Location: 584729-585083 bp Feature: gene Location: 585136-585345 bp Feature: gene Location: 585798-587282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586200-586890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586200-586890 bp Feature: gene Location: 587360-587599 bp Feature: gene Location: 587599-587916 bp Feature: domain Description: PRK10276 Location: 587605-587719 bp Feature: domain Description: PRK1 0276 Location: 587605-58771 9 bp Feature: domain Description: PRK10276 Location: 587746-587815 bp Feature: domain Description: PRK1 0276 Location: 587746-58781 5 bp Feature: gene Location: 1029664-1030227 bp Feature: domain Description: YbjK Location: 1029670-1030207 bp Feature: domain Description: YbjK Location: 1 029670-1 030207 bp Feature: gene Location: 1030350-1031402 bp Feature: domain Description: int Location: 1030353-1031352 bp Feature: domain Description: int Location: 1 030353-1 031 352 bp Feature: gene Location: 1031821-1033305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032223-1032913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 032223-1 03291 3 bp Feature: gene Location: 1033404-1034348 bp Feature: gene Location: 1034360-1035295 bp Feature: domain Description: Phage_CI_repr Location: 1034444-1034627 bp Feature: domain Description: Phage_CI_repr Location: 1 034444-1 034627 bp Feature: domain Description: Phage_CI_repr Location: 1034756-1034948 bp Feature: domain Description: Phage_CI_repr Location: 1 034756-1 034948 bp Feature: domain Description: Phage_CI_C Location: 1034975-1035269 bp Feature: domain Description: Phage_CI_C Location: 1 034975-1 035269 bp Feature: gene Location: 1373155-1374294 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1373338-1374238 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 373338-1 374238 bp Feature: gene Location: 1374465-1374707 bp Feature: domain Description: DinI Location: 1374516-1374696 bp Feature: domain Description: DinI Location: 1 37451 6-1 374696 bp Feature: gene Location: 1375325-1376809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375727-1376417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 375727-1 37641 7 bp Feature: gene Location: 1376888-1377307 bp Feature: domain Description: PRK10276 Location: 1376891-1377302 bp Feature: domain Description: PRK1 0276 Location: 1 376891 -1 377302 bp Feature: gene Location: 1377310-1378575 bp Feature: domain Description: umuC Location: 1377313-1378573 bp Feature: domain Description: umuC Location: 1 37731 3-1 378573 bp Feature: gene Location: 1556652-1557356 bp Feature: domain Description: Rve Location: 1556655-1557300 bp Feature: domain Description: Rve Location: 1 556655-1 557300 bp Feature: gene Location: 1557422-1557871 bp Feature: domain Description: PinE Location: 1557431-1557863 bp Feature: domain Description: PinE Location: 1 557431 -1 557863 bp Feature: gene Location: 1559269-1560753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559671-1560361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 559671 -1 560361 bp Feature: gene Location: 1560746-1561252 bp Feature: domain Description: PRK10276 Location: 1560836-1561247 bp Feature: domain Description: PRK1 0276 Location: 1 560836-1 561 247 bp Feature: gene Location: 1561254-1562519 bp Feature: domain Description: umuC Location: 1561257-1562517 bp Feature: domain Description: umuC Location: 1 561 257-1 56251 7 bp Feature: gene Location: 1940126-1940797 bp Feature: domain Description: Plasmid_stab_B Location: 1940141-1940348 bp Feature: domain Description: Plasmid_stab_B Location: 1 9401 41 -1 940348 bp Feature: domain Description: Plasmid_stab_B Location: 1940453-1940660 bp Feature: domain Description: Plasmid_stab_B Location: 1 940453-1 940660 bp Feature: gene Location: 1940800-1941771 bp Feature: domain Description: StbA Location: 1940803-1941748 bp Feature: domain Description: StbA Location: 1 940803-1 941 748 bp Feature: gene Location: 1942347-1943831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942749-1943439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 942749-1 943439 bp Feature: gene Location: 1943914-1944345 bp Feature: domain Description: PRK10276 Location: 1943965-1944328 bp Feature: domain Description: PRK1 0276 Location: 1 943965-1 944328 bp Feature: gene Location: 1944345-1945616 bp Feature: domain Description: umuC Location: 1944348-1945608 bp Feature: domain Description: umuC Location: 1 944348-1 945608 bp Feature: gene Location: 3067220-3068278 bp Feature: domain Description: YccC Location: 3067226-3068264 bp Feature: domain Description: YccC Location: 3067226-3068264 bp Feature: gene Location: 3068377-3068850 bp Feature: domain Description: PRK10016 Location: 3068380-3068839 bp Feature: domain Description: PRK1 001 6 Location: 3068380-3068839 bp Feature: gene Location: 3068932-3070416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069334-3070024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069334-3070024 bp Feature: gene Location: 3070937-3072100 bp Feature: domain Description: dacD Location: 3070940-3072095 bp Feature: domain Description: dacD Location: 3070940-3072095 bp Feature: gene Location: 3072281-3073705 bp Feature: domain Description: SbcB Location: 3072287-3073703 bp Feature: domain Description: SbcB Location: 3072287-3073703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
Rve (COG3316), PinE (COG1961), Plasmid_stab_B (pfam10784), StbA (pfam06406), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)