myRT

myRT report for GCA_001185845.1_Bact_sp_3_1_13_V1

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Seq: KQ236957.1 Bacteroides sp. 3_1_13 genomic scaffold supercont1.3, whole genome shotgun sequence (253793 bp)
Overview 1 RT 1: 11918-18956 bp Neighborhood of RT #1 [11918, 19078] recQ RVT_N RVT-GII GIIM HTH_18 Peptidase_M49 Peptidase_M49 Feature: gene Location: 11918-12040 bp Feature: gene Location: 12183-13991 bp Ori: KMW75441.1 Feature: domain Description: recQ Location: 12186-13980 bp Feature: domain Description: recQ Location: 1 21 86-1 3980 bp Feature: gene Location: 14108-15655 bp Ori: KMW75442.1 Feature: domain Description: RVT_N Location: 14177-14420 bp Feature: domain Description: RVT_N Location: 1 41 77-1 4420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14465-15110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4465-1 51 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 15164-15398 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 64-1 5398 bp Feature: gene Location: 16470-16934 bp Ori: KMW75443.1 Feature: domain Description: HTH_18 Location: 16668-16911 bp Feature: domain Description: HTH_1 8 Location: 1 6668-1 691 1 bp Feature: gene Location: 17030-19078 bp Ori: KMW75444.1 Feature: domain Description: Peptidase_M49 Location: 17747-18431 bp Feature: domain Description: Peptidase_M49 Location: 1 7747-1 8431 bp Feature: domain Description: Peptidase_M49 Location: 18452-18956 bp Feature: domain Description: Peptidase_M49 Location: 1 8452-1 8956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recQ (TIGR01389), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_18 (pfam12833), Peptidase_M49 (pfam03571)

Seq: KQ236956.1 Bacteroides sp. 3_1_13 genomic scaffold supercont1.2, whole genome shotgun sequence (2470686 bp)
Overview 1 RT 1: 853252-861974 bp 2 RT 2: 2017257-2019306 bp 3 RT 3: 2196146-2201390 bp 4 RT 4: 2320475-2328152 bp 5 RT 5: 2432595-2444996 bp Neighborhood of RT #1 [853252, 861982] PRK13426 DUF4114 LruC_dom RVT_N RVT-GII GIIM DEXSc_Pif1_like SF1_C_RecD HRDC HTH_40 Lys_export Neighborhood of RT #2 [2017257, 2019306] RVT-GII Neighborhood of RT #3 [2196146, 2201596] COG3943 RVT-UG2 HTH_17 DUF3987 Neighborhood of RT #4 [2320475, 2328262] SLC5sbd_u1 FAD_oxidored RVT_N RVT-GII GIIM PurR SHE3 Neighborhood of RT #5 [2432595, 2445121] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 853252-854148 bp Ori: KMW76697.1 Feature: domain Description: PRK13426 Location: 853255-854143 bp Feature: domain Description: PRK1342 6 Location: 8532 55-854143 bp Feature: gene Location: 854302-856245 bp Ori: KMW76698.1 Feature: domain Description: DUF4114 Location: 855262-855505 bp Feature: domain Description: DUF4114 Location: 8552 62 -855505 bp Feature: domain Description: LruC_dom Location: 855601-856231 bp Feature: domain Description: LruC_dom Location: 855601-8562 31 bp Feature: gene Location: 856975-858522 bp Ori: KMW76699.1 Feature: domain Description: RVT_N Location: 857044-857287 bp Feature: domain Description: RVT_N Location: 857044-8572 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857332-857977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857332 -857977 bp Feature: domain Description: GIIM Note: maturase Location: 858031-858265 bp Feature: domain Description: GIIM Note: maturase Location: 858031-8582 65 bp Feature: gene Location: 858639-861266 bp Ori: KMW76700.1 Feature: domain Description: DEXSc_Pif1_like Location: 858684-859209 bp Feature: domain Description: DEXSc_Pif1_like Location: 858684-8592 09 bp Feature: domain Description: SF1_C_RecD Location: 859224-859860 bp Feature: domain Description: SF1_C_RecD Location: 8592 2 4-859860 bp Feature: domain Description: HRDC Location: 860592-860787 bp Feature: domain Description: HRDC Location: 860592 -860787 bp Feature: domain Description: HTH_40 Location: 860988-861249 bp Feature: domain Description: HTH_40 Location: 860988-8612 49 bp Feature: gene Location: 861362-861982 bp Ori: KMW76701.1 Feature: domain Description: Lys_export Location: 861386-861974 bp Feature: domain Description: Lys_export Location: 861386-861974 bp Feature: gene Location: 2017257-2017631 bp Feature: gene Location: 2017637-2017750 bp Feature: gene Location: 2018618-2018938 bp Ori: KMW76256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018621-2018858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 01862 1-2 018858 bp Feature: gene Location: 2018950-2019078 bp Feature: gene Location: 2019184-2019306 bp Feature: gene Location: 2196146-2196511 bp Ori: KMW75832.1 Feature: domain Description: COG3943 Location: 2196185-2196437 bp Feature: domain Description: COG3943 Location: 2 196185-2 196437 bp Feature: gene Location: 2196676-2197668 bp Feature: gene Location: 2197680-2199263 bp Ori: KMW75834.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2197917-2198877 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 197917-2 198877 bp Feature: gene Location: 2199843-2200208 bp Ori: KMW75835.1 Feature: domain Description: HTH_17 Location: 2199978-2200116 bp Feature: domain Description: HTH_17 Location: 2 199978-2 2 00116 bp Feature: gene Location: 2200220-2201596 bp Ori: KMW75836.1 Feature: domain Description: DUF3987 Location: 2200370-2201390 bp Feature: domain Description: DUF3987 Location: 2 2 00370-2 2 01390 bp Feature: gene Location: 2320475-2322265 bp Ori: KMW75655.1 Feature: domain Description: SLC5sbd_u1 Location: 2320487-2321927 bp Feature: domain Description: SLC5sbd_u1 Location: 2 32 0487-2 32 192 7 bp Feature: gene Location: 2322280-2323599 bp Ori: KMW75656.1 Feature: domain Description: FAD_oxidored Location: 2322343-2323576 bp Feature: domain Description: FAD_oxidored Location: 2 32 2 343-2 32 3576 bp Feature: gene Location: 2323827-2325374 bp Ori: KMW75657.1 Feature: domain Description: RVT_N Location: 2323896-2324139 bp Feature: domain Description: RVT_N Location: 2 32 3896-2 32 4139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2324184-2324829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 4184-2 32 482 9 bp Feature: domain Description: GIIM Note: maturase Location: 2324883-2325117 bp Feature: domain Description: GIIM Note: maturase Location: 2 32 4883-2 32 5117 bp Feature: gene Location: 2326138-2327160 bp Ori: KMW75658.1 Feature: domain Description: PurR Location: 2326153-2327146 bp Feature: domain Description: PurR Location: 2 32 6153-2 32 7146 bp Feature: gene Location: 2327948-2328262 bp Ori: KMW75659.1 Feature: domain Description: SHE3 Location: 2327978-2328152 bp Feature: domain Description: SHE3 Location: 2 32 7978-2 32 8152 bp Feature: gene Location: 2432595-2434394 bp Ori: KMW75741.1 Feature: domain Description: rpsA Location: 2432664-2434263 bp Feature: domain Description: rpsA Location: 2 432 664-2 4342 63 bp Feature: gene Location: 2434491-2440532 bp Ori: KMW75742.1 Feature: domain Description: DUF4011 Location: 2435721-2436234 bp Feature: domain Description: DUF4011 Location: 2 43572 1-2 4362 34 bp Feature: domain Description: DEXXQc_SF1 Location: 2436573-2437014 bp Feature: domain Description: DEXXQc_SF1 Location: 2 436573-2 437014 bp Feature: domain Description: DEXXQc_SF1 Location: 2438010-2438760 bp Feature: domain Description: DEXXQc_SF1 Location: 2 438010-2 438760 bp Feature: domain Description: TIGR00376 Location: 2438889-2439279 bp Feature: domain Description: TIGR00376 Location: 2 438889-2 4392 79 bp Feature: domain Description: MTES_1575 Location: 2439432-2439717 bp Feature: domain Description: MTES_1575 Location: 2 439432 -2 439717 bp Feature: domain Description: DUF3320 Location: 2440047-2440182 bp Feature: domain Description: DUF332 0 Location: 2 440047-2 440182 bp Feature: gene Location: 2440583-2441713 bp Ori: KMW75743.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2440904-2441447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 440904-2 441447 bp Feature: gene Location: 2441921-2444032 bp Feature: gene Location: 2444297-2445121 bp Ori: KMW75745.1 Feature: domain Description: PDDEXK_2 Location: 2444318-2444996 bp Feature: domain Description: PDDEXK_2 Location: 2 444318-2 444996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13426 (F0F1 ATP synthase subunit gamma; Provisional), DUF4114 (pfam13448), LruC_dom (TIGR04456), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEXSc_Pif1_like (cd18037), SF1_C_RecD (cd18809), HRDC (smart00341), HTH_40 (pfam14493)
Lys_export (pfam03956), COG3943 (Uncharacterized conserved protein ), RVT-UG2, HTH_17 (pfam12728), DUF3987 (pfam13148), SLC5sbd_u1 (cd11477), FAD_oxidored (pfam12831), PurR (COG1609), SHE3 (pfam17078), rpsA (TIGR00717)
DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: KQ236958.1 Bacteroides sp. 3_1_13 genomic scaffold supercont1.4, whole genome shotgun sequence (230676 bp)
Overview 1 RT 1: 79448-85137 bp Neighborhood of RT #1 [79448, 85154] MmcQ Crp RVT_N RVT-GII GIIM EmrE FhlA TMAO_torS Feature: gene Location: 79448-79813 bp Ori: KMW75282.1 Feature: domain Description: MmcQ Location: 79451-79802 bp Feature: domain Description: MmcQ Location: 79451-79802 bp Feature: gene Location: 79888-80460 bp Ori: KMW75283.1 Feature: domain Description: Crp Location: 79930-80452 bp Feature: domain Description: Crp Location: 7993 0-80452 bp Feature: gene Location: 81154-82701 bp Ori: KMW75284.1 Feature: domain Description: RVT_N Location: 81223-81466 bp Feature: domain Description: RVT_N Location: 81223 -81466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81511-82156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81511-82156 bp Feature: domain Description: GIIM Note: maturase Location: 82210-82444 bp Feature: domain Description: GIIM Note: maturase Location: 82210-82444 bp Feature: gene Location: 82822-83142 bp Ori: KMW75285.1 Feature: domain Description: EmrE Location: 82825-83137 bp Feature: domain Description: EmrE Location: 82825-83 13 7 bp Feature: gene Location: 83442-85154 bp Ori: KMW75286.1 Feature: domain Description: FhlA Location: 83577-84084 bp Feature: domain Description: FhlA Location: 83 577-84084 bp Feature: domain Description: TMAO_torS Location: 84453-85137 bp Feature: domain Description: TMAO_torS Location: 84453 -8513 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MmcQ (COG2315), Crp (pfam00325), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), EmrE (pfam13536), FhlA (COG3604), TMAO_torS (TIGR02956)

Seq: KQ236955.1 Bacteroides sp. 3_1_13 genomic scaffold supercont1.1, whole genome shotgun sequence (3268607 bp)
Overview 1 RT 1: 838454-846601 bp 2 RT 2: 1093042-1100603 bp 3 RT 3: 2745339-2753842 bp 4 RT 4: 3209442-3214661 bp Neighborhood of RT #1 [838454, 846601] COG3943 Doc RVT_N RVT-GII GIIM AAA-ATPase_like PDDEXK_9 Neighborhood of RT #2 [1093042, 1100644] CE4_NodB_like_3 DUF2723 RVT_N RVT-GII GIIM Gp49 HTH_XRE Neighborhood of RT #3 [2745339, 2753910] INT_RitA_C_like COG4646 RVT_N RVT-GII YkfC PRK13351 Neighborhood of RT #4 [3209442, 3214661] SSB_OBF SSB_OBF DUF1738 RVT-GII Intron_maturas2 DUF1738 MPTase-PolyVal Feature: gene Location: 838454-839446 bp Ori: KMW80899.1 Feature: domain Description: COG3943 Location: 838469-838841 bp Feature: domain Description: COG394 3 Location: 8384 69-83884 1 bp Feature: domain Description: Doc Location: 839129-839324 bp Feature: domain Description: Doc Location: 839129-839324 bp Feature: gene Location: 839513-841165 bp Feature: gene Location: 841282-842829 bp Ori: KMW80901.1 Feature: domain Description: RVT_N Location: 841351-841594 bp Feature: domain Description: RVT_N Location: 84 1351-84 1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841639-842284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 1639-84 2284 bp Feature: domain Description: GIIM Note: maturase Location: 842338-842572 bp Feature: domain Description: GIIM Note: maturase Location: 84 2338-84 2572 bp Feature: gene Location: 843837-845564 bp Ori: KMW80902.1 Feature: domain Description: AAA-ATPase_like Location: 843861-844755 bp Feature: domain Description: AAA-ATPase_like Location: 84 3861-84 4 755 bp Feature: domain Description: PDDEXK_9 Location: 845226-845556 bp Feature: domain Description: PDDEXK_9 Location: 84 5226-84 5556 bp Feature: gene Location: 846140-846601 bp Feature: gene Location: 1093042-1093656 bp Ori: KMW80085.1 Feature: domain Description: CE4_NodB_like_3 Location: 1093123-1093648 bp Feature: domain Description: CE4 _NodB_like_3 Location: 1093123-109364 8 bp Feature: gene Location: 1093767-1097180 bp Ori: KMW80086.1 Feature: domain Description: DUF2723 Location: 1093872-1094403 bp Feature: domain Description: DUF2723 Location: 1093872-1094 4 03 bp Feature: gene Location: 1098321-1099868 bp Ori: KMW80087.1 Feature: domain Description: RVT_N Location: 1098390-1098633 bp Feature: domain Description: RVT_N Location: 1098390-1098633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098678-1099323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098678-1099323 bp Feature: domain Description: GIIM Note: maturase Location: 1099377-1099611 bp Feature: domain Description: GIIM Note: maturase Location: 1099377-1099611 bp Feature: gene Location: 1099981-1100322 bp Ori: KMW80088.1 Feature: domain Description: Gp49 Location: 1100032-1100296 bp Feature: domain Description: Gp4 9 Location: 1100032-1100296 bp Feature: gene Location: 1100327-1100644 bp Ori: KMW80089.1 Feature: domain Description: HTH_XRE Location: 1100441-1100603 bp Feature: domain Description: HTH_XRE Location: 11004 4 1-1100603 bp Feature: gene Location: 2745339-2746550 bp Ori: KMW78027.1 Feature: domain Description: INT_RitA_C_like Location: 2745969-2746506 bp Feature: domain Description: INT_RitA_C_like Location: 274 5969-274 6506 bp Feature: gene Location: 2746708-2747718 bp Ori: KMW78028.1 Feature: domain Description: COG4646 Location: 2746714-2747335 bp Feature: domain Description: COG4 64 6 Location: 274 6714 -274 7335 bp Feature: gene Location: 2748375-2750060 bp Ori: KMW78029.1 Feature: domain Description: RVT_N Location: 2748447-2748690 bp Feature: domain Description: RVT_N Location: 274 84 4 7-274 8690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748735-2749383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274 8735-274 9383 bp Feature: domain Description: YkfC Location: 2749593-2749683 bp Feature: domain Description: YkfC Location: 274 9593-274 9683 bp Feature: gene Location: 2750044-2751327 bp Feature: gene Location: 2751985-2753910 bp Ori: KMW78031.1 Feature: domain Description: PRK13351 Location: 2751988-2753842 bp Feature: domain Description: PRK13351 Location: 2751988-275384 2 bp Feature: gene Location: 3209442-3210050 bp Ori: KMW77823.1 Feature: domain Description: SSB_OBF Location: 3209460-3209664 bp Feature: domain Description: SSB_OBF Location: 32094 60-3209664 bp Feature: domain Description: SSB_OBF Location: 3209766-3209970 bp Feature: domain Description: SSB_OBF Location: 3209766-3209970 bp Feature: gene Location: 3210056-3210274 bp Ori: KMW77824.1 Feature: domain Description: DUF1738 Location: 3210110-3210260 bp Feature: domain Description: DUF1738 Location: 3210110-3210260 bp Feature: gene Location: 3210820-3212625 bp Ori: KMW77825.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3211084-3211906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3211084 -3211906 bp Feature: domain Description: Intron_maturas2 Location: 3212083-3212305 bp Feature: domain Description: Intron_maturas2 Location: 3212083-3212305 bp Feature: gene Location: 3212618-3214234 bp Ori: KMW77826.1 Feature: domain Description: DUF1738 Location: 3212744-3213020 bp Feature: domain Description: DUF1738 Location: 321274 4 -3213020 bp Feature: domain Description: MPTase-PolyVal Location: 3213182-3213494 bp Feature: domain Description: MPTase-PolyVal Location: 3213182-32134 94 bp Feature: gene Location: 3214293-3214661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), Doc (COG3654), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), CE4_NodB_like_3 (cd10959), DUF2723 (pfam11028), Gp49 (pfam05973)
HTH_XRE (smart00530), INT_RitA_C_like (cd01188), COG4646 (Adenine-specific DNA methylase, N12 class ), YkfC (COG3344), PRK13351 (elongation factor G-like protein), SSB_OBF (cd04496), DUF1738 (pfam08401), Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818)