myRT

myRT report for GCA_001186065.1_Kleb_pneu_CHS86_V1

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Seq: KQ236947.1 Klebsiella pneumoniae strain CHS86 genomic scaffold aetzd-supercont1.1, whole genome shotgun sequence (3453180 bp)
Overview 1 RT 1: 735672-742382 bp 2 RT 2: 1172822-1186102 bp 3 RT 3: 1419909-1424430 bp 4 RT 4: 1519549-1524967 bp 5 RT 5: 1684067-1689932 bp 6 RT 6: 2872887-2879370 bp Neighborhood of RT #1 [735672, 742573] Collar RVT-GII PRK10276 Neighborhood of RT #2 [1172822, 1186107] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1419909, 1424432] bssS PRK10597 RVT-GII PRK05451 PRK10598 Neighborhood of RT #4 [1519549, 1524969] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1684067, 1689934] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #6 [2872887, 2879372] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 735672-736841 bp Ori: KMX94091.1 Feature: domain Description: Collar Location: 736374-736545 bp Feature: domain Description: Collar Location: 736374-736545 bp Feature: gene Location: 736878-740036 bp Feature: gene Location: 740452-741939 bp Ori: KMX94093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740857-741547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740857-741 547 bp Feature: gene Location: 742017-742256 bp Feature: gene Location: 742256-742573 bp Ori: KMX94095.1 Feature: domain Description: PRK10276 Location: 742262-742382 bp Feature: domain Description: PRK1 0276 Location: 742262-742382 bp Feature: gene Location: 1172822-1173385 bp Ori: KMX94480.1 Feature: domain Description: YbjK Location: 1172828-1173365 bp Feature: domain Description: YbjK Location: 1 1 72828-1 1 73365 bp Feature: gene Location: 1173508-1174560 bp Ori: KMX94481.1 Feature: domain Description: int Location: 1173511-1174510 bp Feature: domain Description: int Location: 1 1 7351 1 -1 1 7451 0 bp Feature: gene Location: 1174976-1176463 bp Ori: KMX94482.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175381-1176071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 75381 -1 1 76071 bp Feature: gene Location: 1176562-1177506 bp Feature: gene Location: 1177518-1178453 bp Ori: KMX94484.1 Feature: domain Description: Phage_CI_repr Location: 1177602-1177785 bp Feature: domain Description: Phage_CI_repr Location: 1 1 77602-1 1 77785 bp Feature: domain Description: Phage_CI_repr Location: 1177914-1178106 bp Feature: domain Description: Phage_CI_repr Location: 1 1 7791 4-1 1 781 06 bp Feature: domain Description: Phage_CI_C Location: 1178133-1178427 bp Feature: domain Description: Phage_CI_C Location: 1 1 781 33-1 1 78427 bp Feature: gene Location: 1180343-1181200 bp Ori: KMX94491.1 Feature: domain Description: dam Location: 1180346-1181123 bp Feature: domain Description: dam Location: 1 1 80346-1 1 81 1 23 bp Feature: gene Location: 1181197-1183611 bp Ori: KMX94492.1 Feature: domain Description: Phage_GPA Location: 1181761-1182727 bp Feature: domain Description: Phage_GPA Location: 1 1 81 761 -1 1 82727 bp Feature: gene Location: 1184087-1185574 bp Ori: KMX94493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184492-1185182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 84492-1 1 851 82 bp Feature: gene Location: 1185675-1185863 bp Feature: gene Location: 1185874-1186107 bp Ori: KMX94495.1 Feature: domain Description: DinI Location: 1185916-1186102 bp Feature: domain Description: DinI Location: 1 1 8591 6-1 1 861 02 bp Feature: gene Location: 1419909-1420163 bp Ori: KMX93182.1 Feature: domain Description: bssS Location: 1419912-1420161 bp Feature: domain Description: bssS Location: 1 41 991 2-1 4201 61 bp Feature: gene Location: 1420466-1420717 bp Ori: KMX93183.1 Feature: domain Description: PRK10597 Location: 1420469-1420706 bp Feature: domain Description: PRK1 0597 Location: 1 420469-1 420706 bp Feature: gene Location: 1421120-1422607 bp Ori: KMX93184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1421525-1422215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 421 525-1 42221 5 bp Feature: gene Location: 1422700-1423746 bp Ori: KMX93185.1 Feature: domain Description: PRK05451 Location: 1422715-1423741 bp Feature: domain Description: PRK05451 Location: 1 42271 5-1 423741 bp Feature: gene Location: 1423872-1424432 bp Ori: KMX93186.1 Feature: domain Description: PRK10598 Location: 1423875-1424430 bp Feature: domain Description: PRK1 0598 Location: 1 423875-1 424430 bp Feature: gene Location: 1519549-1520688 bp Ori: KMX93281.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1519732-1520632 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 51 9732-1 520632 bp Feature: gene Location: 1520859-1521101 bp Ori: KMX93282.1 Feature: domain Description: DinI Location: 1520910-1521090 bp Feature: domain Description: DinI Location: 1 52091 0-1 521 090 bp Feature: gene Location: 1521716-1523203 bp Ori: KMX93283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522121-1522811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5221 21 -1 52281 1 bp Feature: gene Location: 1523282-1523701 bp Ori: KMX93284.1 Feature: domain Description: PRK10276 Location: 1523285-1523696 bp Feature: domain Description: PRK1 0276 Location: 1 523285-1 523696 bp Feature: gene Location: 1523704-1524969 bp Ori: KMX93285.1 Feature: domain Description: umuC Location: 1523707-1524967 bp Feature: domain Description: umuC Location: 1 523707-1 524967 bp Feature: gene Location: 1684067-1684771 bp Ori: KMX93451.1 Feature: domain Description: Rve Location: 1684070-1684715 bp Feature: domain Description: Rve Location: 1 684070-1 68471 5 bp Feature: gene Location: 1684837-1685286 bp Ori: KMX93452.1 Feature: domain Description: PinE Location: 1684846-1685278 bp Feature: domain Description: PinE Location: 1 684846-1 685278 bp Feature: gene Location: 1686681-1688168 bp Ori: KMX93453.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1687086-1687776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 687086-1 687776 bp Feature: gene Location: 1688161-1688667 bp Ori: KMX93454.1 Feature: domain Description: PRK10276 Location: 1688251-1688662 bp Feature: domain Description: PRK1 0276 Location: 1 688251 -1 688662 bp Feature: gene Location: 1688669-1689934 bp Ori: KMX93455.1 Feature: domain Description: umuC Location: 1688672-1689932 bp Feature: domain Description: umuC Location: 1 688672-1 689932 bp Feature: gene Location: 2872887-2873945 bp Ori: KMX91143.1 Feature: domain Description: YccC Location: 2872893-2873931 bp Feature: domain Description: YccC Location: 2872893-2873931 bp Feature: gene Location: 2874044-2874517 bp Ori: KMX91144.1 Feature: domain Description: PRK10016 Location: 2874047-2874506 bp Feature: domain Description: PRK1 001 6 Location: 2874047-2874506 bp Feature: gene Location: 2874599-2876086 bp Ori: KMX91145.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875004-2875694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875004-2875694 bp Feature: gene Location: 2876604-2877767 bp Ori: KMX91146.1 Feature: domain Description: dacD Location: 2876607-2877762 bp Feature: domain Description: dacD Location: 2876607-2877762 bp Feature: gene Location: 2877948-2879372 bp Ori: KMX91147.1 Feature: domain Description: SbcB Location: 2877954-2879370 bp Feature: domain Description: SbcB Location: 2877954-2879370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collar (pfam07484), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183)
bssS (PRK12301), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10598 (lipoprotein; Provisional), GT9_LPS_heptosyltransferase (cd03789), umuC (PRK03609), Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC)
dacD (PRK11397), SbcB (COG2925)

Seq: KQ236949.1 Klebsiella pneumoniae strain CHS86 genomic scaffold aetzd-supercont1.3, whole genome shotgun sequence (157155 bp)
Overview 1 RT 1: 99570-104564 bp Neighborhood of RT #1 [99570, 104566] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 99570-100841 bp Ori: KMX84112.1 Feature: domain Description: umuC Location: 99573-100836 bp Feature: domain Description: umuC Location: 99573-100836 bp Feature: gene Location: 100841-101266 bp Ori: KMX84113.1 Feature: domain Description: PRK10276 Location: 100844-101252 bp Feature: domain Description: PRK102 76 Location: 100844-1012 52 bp Feature: gene Location: 101669-103156 bp Ori: KMX84114.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102074-102764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 074-102 764 bp Feature: gene Location: 103390-103620 bp Feature: gene Location: 104141-104566 bp Ori: KMX84116.1 Feature: domain Description: Antirestrict Location: 104276-104564 bp Feature: domain Description: Antirestrict Location: 1042 76-104564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KQ236950.1 Klebsiella pneumoniae strain CHS86 genomic scaffold aetzd-supercont1.4, whole genome shotgun sequence (71955 bp)
Overview 1 RT 1: 18234-25314 bp 2 RT 2: 57065-62193 bp Neighborhood of RT #1 [18234, 25322] HNH_2 Rve RVT-GII PRK10276 umuC Neighborhood of RT #2 [57065, 62249] InsE PHA02517 RVT-GII Rve RVT-GII GIIM Rve Rve Feature: gene Location: 18234-19703 bp Ori: KMX84065.1 Feature: domain Description: HNH_2 Location: 19425-19563 bp Feature: domain Description: HNH_2 Location: 19425-19563 bp Feature: gene Location: 20802-21506 bp Ori: KMX84066.1 Feature: domain Description: Rve Location: 20805-21450 bp Feature: domain Description: Rve Location: 20805-21450 bp Feature: gene Location: 21727-23214 bp Ori: KMX84067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22132-22822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213 2-22822 bp Feature: gene Location: 23620-24051 bp Ori: KMX84068.1 Feature: domain Description: PRK10276 Location: 23671-24034 bp Feature: domain Description: PRK10276 Location: 23 671-2403 4 bp Feature: gene Location: 24051-25322 bp Ori: KMX84069.1 Feature: domain Description: umuC Location: 24054-25314 bp Feature: domain Description: umuC Location: 24054-253 14 bp Feature: gene Location: 57065-57367 bp Ori: KMX82482.1 Feature: domain Description: InsE Location: 57074-57356 bp Feature: domain Description: InsE Location: 57074-573 56 bp Feature: gene Location: 57580-57819 bp Ori: KMX82483.1 Feature: domain Description: PHA02517 Location: 57583-57754 bp Feature: domain Description: PHA02517 Location: 57583 -57754 bp Feature: gene Location: 58411-59046 bp Ori: KMX82484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58684-59029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58684-59029 bp Feature: gene Location: 59093-59797 bp Ori: KMX82485.1 Feature: domain Description: Rve Location: 59096-59741 bp Feature: domain Description: Rve Location: 59096-59741 bp Feature: gene Location: 59688-60476 bp Ori: KMX82486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59694-60003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59694-60003 bp Feature: domain Description: GIIM Note: maturase Location: 60078-60276 bp Feature: domain Description: GIIM Note: maturase Location: 60078-60276 bp Feature: gene Location: 60608-61312 bp Ori: KMX82487.1 Feature: domain Description: Rve Location: 60611-61256 bp Feature: domain Description: Rve Location: 60611-61256 bp Feature: gene Location: 61545-62249 bp Ori: KMX81894.1 Feature: domain Description: Rve Location: 61548-62193 bp Feature: domain Description: Rve Location: 61548-62193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_2 (pfam13391), Rve (COG3316), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)