myRT

myRT report for GCA_001186315.2_Esch_coli_M114_V2

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Seq: KQ241471.1 Escherichia coli M114 genomic scaffold supercont2.2, whole genome shotgun sequence (711712 bp)
Overview 1 RT 1: 611977-615513 bp Neighborhood of RT #1 [611977, 615539] RVT-Retrons YgbA_NO Feature: gene Location: 611977-612378 bp Feature: gene Location: 612638-613300 bp Feature: gene Location: 613290-614471 bp Ori: KNA42649.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 613440-614016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 3440-61 401 6 bp Feature: gene Location: 614984-615118 bp Feature: gene Location: 615195-615539 bp Ori: KNA42651.1 Feature: domain Description: YgbA_NO Location: 615207-615513 bp Feature: domain Description: YgbA_NO Location: 61 5207-61 551 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YgbA_NO (pfam11756)

Seq: KQ241475.1 Escherichia coli M114 genomic scaffold supercont2.6, whole genome shotgun sequence (402579 bp)
Overview 1 RT 1: 49356-55493 bp Neighborhood of RT #1 [49356, 55630] HTH_38 HTH_38 Tra8 RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 49356-49781 bp Ori: KNA41185.1 Feature: domain Description: HTH_38 Location: 49365-49479 bp Feature: domain Description: HTH_38 Location: 49365-49479 bp Feature: domain Description: HTH_38 Location: 49530-49650 bp Feature: domain Description: HTH_38 Location: 49530-49650 bp Feature: gene Location: 50153-50419 bp Ori: KNA41020.1 Feature: domain Description: Tra8 Location: 50156-50408 bp Feature: domain Description: Tra8 Location: 50156-50408 bp Feature: gene Location: 50422-53625 bp Ori: KNA41021.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 50950-51439 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 50950-51439 bp Feature: domain Description: nitrilase Location: 52945-53542 bp Feature: domain Description: nitrilase Location: 52 945-53542 bp Feature: gene Location: 53941-54723 bp Ori: KNA41022.1 Feature: domain Description: AbiEi_3_N Location: 53953-54214 bp Feature: domain Description: AbiEi_3_N Location: 53953-542 14 bp Feature: domain Description: AbiEi_3 Location: 54226-54682 bp Feature: domain Description: AbiEi_3 Location: 542 2 6-54682 bp Feature: gene Location: 54710-55630 bp Ori: KNA41023.1 Feature: domain Description: AbiEii Location: 54752-55493 bp Feature: domain Description: AbiEii Location: 54752 -55493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)