myRT

myRT report for GCA_001188055.2_ASM118805v2

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Seq: JWSL02000004.1 Shigella flexneri strain FDAARGOS_59 scf7180000000019_quiver_pilon, whole genome shotgun sequence (4202474 bp)
Overview 1 RT 1: 2647124-2652984 bp Neighborhood of RT #1 [2647124, 2653103] PRK10597 SLATT_5 RVT-UG17 Caudo_TAP phage_tail_N Phage_fiber_2 Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 2647124-2647372 bp Ori: PNP03483.1 Feature: domain Description: PRK10597 Location: 2647127-2647367 bp Feature: domain Description: PRK1 0597 Location: 26471 27-2647367 bp Feature: gene Location: 2647595-2648146 bp Ori: PNP03484.1 Feature: domain Description: SLATT_5 Location: 2647601-2648117 bp Feature: domain Description: SLATT_5 Location: 2647601 -26481 1 7 bp Feature: gene Location: 2648124-2649494 bp Ori: PNP03485.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2648352-2648958 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2648352-2648958 bp Feature: gene Location: 2649607-2650191 bp Ori: PNP03486.1 Feature: domain Description: Caudo_TAP Location: 2649823-2650180 bp Feature: domain Description: Caudo_TAP Location: 2649823-26501 80 bp Feature: gene Location: 2650191-2653103 bp Ori: PNP03487.1 Feature: domain Description: phage_tail_N Location: 2650194-2650593 bp Feature: domain Description: phage_tail_N Location: 26501 94-2650593 bp Feature: domain Description: Phage_fiber_2 Location: 2651577-2651697 bp Feature: domain Description: Phage_fiber_2 Location: 2651 577-2651 697 bp Feature: domain Description: Phage_fiber_2 Location: 2651709-2651829 bp Feature: domain Description: Phage_fiber_2 Location: 2651 709-2651 829 bp Feature: domain Description: Phage_fiber_2 Location: 2651841-2651958 bp Feature: domain Description: Phage_fiber_2 Location: 2651 841 -2651 958 bp Feature: domain Description: Collar Location: 2652474-2652612 bp Feature: domain Description: Collar Location: 2652474-265261 2 bp Feature: domain Description: Phage_fiber Location: 2652663-2652702 bp Feature: domain Description: Phage_fiber Location: 2652663-2652702 bp Feature: domain Description: Phage_fiber Location: 2652759-2652798 bp Feature: domain Description: Phage_fiber Location: 2652759-2652798 bp Feature: domain Description: Phage_fiber Location: 2652906-2652945 bp Feature: domain Description: Phage_fiber Location: 2652906-2652945 bp Feature: domain Description: Phage_fiber Location: 2652951-2652984 bp Feature: domain Description: Phage_fiber Location: 2652951 -2652984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), phage_tail_N (pfam08400), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: JWSL02000003.1 Shigella flexneri strain FDAARGOS_59 scf7180000000018_quiver_pilon, whole genome shotgun sequence (169992 bp)
Overview 1 RT 1: 88088-90612 bp Neighborhood of RT #1 [88088, 90617] COG3547 RVT-GII GIIM Acetyltransf_10 COG4453 Feature: gene Location: 88088-88357 bp Feature: domain Description: COG3547 Location: 88094-88346 bp Feature: domain Description: COG3547 Location: 88094-88346 bp Feature: gene Location: 88398-88565 bp Feature: gene Location: 88648-89826 bp Ori: PNP05742.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88795-89449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88795-89449 bp Feature: domain Description: GIIM Note: maturase Location: 89527-89749 bp Feature: domain Description: GIIM Note: maturase Location: 8952 7-89749 bp Feature: gene Location: 89860-90345 bp Ori: PNP05743.1 Feature: domain Description: Acetyltransf_10 Location: 89995-90310 bp Feature: domain Description: Acetyltransf_10 Location: 89995-90310 bp Feature: gene Location: 90333-90617 bp Ori: PNP05744.1 Feature: domain Description: COG4453 Location: 90357-90612 bp Feature: domain Description: COG4453 Location: 90357-90612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673), COG4453 (Uncharacterized conserved protein, DUF1778 family )