myRT

myRT report for GCA_001188495.2_ASM118849v2

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Seq: JNGI01000044.1 Trabulsiella odontotermitis strain 12 SAMPLE12_CONTIG_44, whole genome shotgun sequence (14156 bp)
Overview 1 RT 1: 7774-13282 bp Neighborhood of RT #1 [7774, 13374] InsE TnpB_IS66 RVT_N RVT-GII GIIM HNHc HTH_23 Tra5 HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 7774-8181 bp Feature: domain Description: InsE Location: 7798-8167 bp Feature: domain Description: InsE Location: 7798-81 67 bp Feature: gene Location: 8178-8504 bp Feature: domain Description: TnpB_IS66 Location: 8205-8493 bp Feature: domain Description: TnpB_IS66 Location: 8205-8493 bp Feature: gene Location: 9089-10771 bp Feature: RT Description: RVT_N Location: 9137-9380 bp Feature: RT Description: RVT_N Location: 91 37-9380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9425-10067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9425-1 0067 bp Feature: domain Description: GIIM Note: maturase Location: 10118-10352 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 1 8-1 0352 bp Feature: domain Description: HNHc Note: nucleases Location: 10568-10724 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0568-1 0724 bp Feature: gene Location: 11831-12850 bp Feature: domain Description: HTH_23 Location: 11855-11930 bp Feature: domain Description: HTH_23 Location: 1 1 855-1 1 930 bp Feature: domain Description: Tra5 Location: 12050-12713 bp Feature: domain Description: Tra5 Location: 1 2050-1 271 3 bp Feature: gene Location: 12874-13374 bp Feature: domain Description: HTH_Tnp_1 Location: 12949-13030 bp Feature: domain Description: HTH_Tnp_1 Location: 1 2949-1 3030 bp Feature: domain Description: HTH_Tnp_1 Location: 13066-13282 bp Feature: domain Description: HTH_Tnp_1 Location: 1 3066-1 3282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Tra5 (COG2801), HTH_Tnp_1 (pfam01527), InsE (COG2963), TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)