myRT

myRT report for GCA_001188955.3_ASM118895v3

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Seq: JPRF03000021.1 Kitasatospora aureofaciens strain ATCC 10762 contig_2, whole genome shotgun sequence (613388 bp)
Overview 1 RT 1: 456267-464718 bp Neighborhood of RT #1 [456267, 464718] HTH_31 MLTR_LBD carb_red_PTCR-like_SDR_c RVT-GII Intron_maturas2 HNHc M48_Ste24p_like Feature: gene Location: 456267-457145 bp Ori: OEV37283.1 Feature: domain Description: HTH_31 Location: 456306-456540 bp Feature: domain Description: HTH_31 Location: 456306-456540 bp Feature: domain Description: MLTR_LBD Location: 456597-457104 bp Feature: domain Description: MLTR_LBD Location: 456597-4571 04 bp Feature: gene Location: 457251-457949 bp Ori: OEV37449.1 Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 457260-457944 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 457260-457944 bp Feature: gene Location: 459033-460739 bp Ori: OEV37450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459198-459996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4591 98-459996 bp Feature: domain Description: Intron_maturas2 Location: 460131-460368 bp Feature: domain Description: Intron_maturas2 Location: 4601 31 -460368 bp Feature: domain Description: HNHc Note: nucleases Location: 460533-460695 bp Feature: domain Description: HNHc Note: nucleases Location: 460533-460695 bp Feature: gene Location: 461264-462613 bp Ori: OEV37284.1 Feature: domain Description: M48_Ste24p_like Location: 461651-462500 bp Feature: domain Description: M48_Ste24p_like Location: 461 651 -462500 bp Feature: gene Location: 464194-464718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_31 (pfam13560), MLTR_LBD (pfam17765), carb_red_PTCR-like_SDR_c (cd05324), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), M48_Ste24p_like (cd07328)

Seq: JPRF03000070.1 Kitasatospora aureofaciens strain ATCC 10762 contig_64, whole genome shotgun sequence (22469 bp)
Overview 1 RT 1: 3825-10702 bp Neighborhood of RT #1 [3825, 10713] HTH_ARSR nicotinamidase_related RVT_N RVT-GII GIIM HNH GlxA BaeS Feature: gene Location: 3825-4808 bp Ori: OEV33258.1 Feature: domain Description: HTH_ARSR Location: 4569-4758 bp Feature: domain Description: HTH_ARSR Location: 4569-4758 bp Feature: gene Location: 4965-5528 bp Ori: OEV33259.1 Feature: domain Description: nicotinamidase_related Location: 5037-5463 bp Feature: domain Description: nicotinamidase_related Location: 5037-5463 bp Feature: gene Location: 5557-7314 bp Ori: OEV33260.1 Feature: domain Description: RVT_N Location: 5623-5869 bp Feature: domain Description: RVT_N Location: 562 3-5869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5917-6568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5917-6568 bp Feature: domain Description: GIIM Note: maturase Location: 6619-6853 bp Feature: domain Description: GIIM Note: maturase Location: 6619-6853 bp Feature: domain Description: HNH Note: nucleases Location: 7183-7282 bp Feature: domain Description: HNH Note: nucleases Location: 7183-72 82 bp Feature: gene Location: 8179-9210 bp Ori: OEV33248.1 Feature: domain Description: GlxA Location: 8212-9187 bp Feature: domain Description: GlxA Location: 82 12 -9187 bp Feature: gene Location: 9265-10713 bp Ori: OEV33261.1 Feature: domain Description: BaeS Location: 9742-10702 bp Feature: domain Description: BaeS Location: 9742 -10702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), nicotinamidase_related (cd01014), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), GlxA (COG4977), BaeS (COG0642)

Seq: JPRF03000043.1 Kitasatospora aureofaciens strain ATCC 10762 contig_4, whole genome shotgun sequence (390514 bp)
Overview 1 RT 1: 233451-239155 bp Neighborhood of RT #1 [233451, 239187] Tra8 Tra8 RVT_N RVT-GII GIIM MFS_MefA_like TMR_SDR_a Feature: gene Location: 233451-233822 bp Feature: gene Location: 233777-234427 bp Feature: domain Description: Tra8 Location: 233816-234044 bp Feature: domain Description: Tra8 Location: 23 3 816-23 4044 bp Feature: domain Description: Tra8 Location: 234143-234428 bp Feature: domain Description: Tra8 Location: 23 4143 -23 4428 bp Feature: gene Location: 235111-236913 bp Ori: OEV34751.1 Feature: domain Description: RVT_N Location: 235195-235432 bp Feature: domain Description: RVT_N Location: 23 5195-23 543 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235492-236152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 5492-23 6152 bp Feature: domain Description: GIIM Note: maturase Location: 236206-236437 bp Feature: domain Description: GIIM Note: maturase Location: 23 6206-23 643 7 bp Feature: gene Location: 237721-238017 bp Ori: OEV34752.1 Feature: domain Description: MFS_MefA_like Location: 237832-237988 bp Feature: domain Description: MFS_MefA_like Location: 23 783 2-23 7988 bp Feature: gene Location: 238327-239187 bp Ori: OEV34753.1 Feature: domain Description: TMR_SDR_a Location: 238333-239155 bp Feature: domain Description: TMR_SDR_a Location: 23 83 3 3 -23 9155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173), TMR_SDR_a (cd05269)

Seq: JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence (239496 bp)
Overview 1 RT 1: 185948-189566 bp Neighborhood of RT #1 [185948, 190086] HTH_1 PBP2_LTTR_like_6 RVT-GII RVT-GII GIIM DDE_5 Feature: gene Location: 185948-186835 bp Ori: OEV39077.1 Feature: domain Description: HTH_1 Location: 185960-186134 bp Feature: domain Description: HTH_1 Location: 185960-186134 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 186230-186812 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 186230-186812 bp Feature: gene Location: 187046-187516 bp Feature: gene Location: 187572-188330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187869-188310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187869-188310 bp Feature: gene Location: 188465-188797 bp Ori: OEV39079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188474-188558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884 74 -188558 bp Feature: domain Description: GIIM Note: maturase Location: 188627-188759 bp Feature: domain Description: GIIM Note: maturase Location: 188627-188759 bp Feature: gene Location: 188794-189057 bp Feature: gene Location: 189146-190086 bp Feature: domain Description: DDE_5 Location: 189170-189566 bp Feature: domain Description: DDE_5 Location: 189170-189566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_LTTR_like_6 (cd08423), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)