myRT

myRT report for GCA_001189235.2_ASM118923v2

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Seq: LFIP02000004.1 Bradyrhizobium embrapense strain SEMIA 6208 scaffold4.1, whole genome shotgun sequence (809967 bp)
Overview 1 RT 1: 572579-577809 bp Neighborhood of RT #1 [572579, 577844] SWIM RVT-Retrons PRK06033 PRK14341 Feature: gene Location: 572579-574249 bp Feature: domain Description: SWIM Location: 574079-574190 bp Feature: domain Description: SWIM Location: 574079-5741 90 bp Feature: gene Location: 574602-575180 bp Feature: gene Location: 575192-576406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 575198-575774 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5751 98-575774 bp Feature: gene Location: 576810-577055 bp Feature: domain Description: PRK06033 Location: 576813-577044 bp Feature: domain Description: PRK06033 Location: 57681 3-577044 bp Feature: gene Location: 577116-577844 bp Feature: domain Description: PRK14341 Location: 577176-577809 bp Feature: domain Description: PRK1 4341 Location: 5771 76-577809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, PRK06033 (flagellar motor switch protein FliN), PRK14341 (lipoyl(octanoyl) transferase LipB)

Seq: LFIP02000012.1 Bradyrhizobium embrapense strain SEMIA 6208 scaffold12.1, whole genome shotgun sequence (139684 bp)
Overview 1 RT 1: 102820-110571 bp Neighborhood of RT #1 [102820, 110571] ROK ROK MhpC RVT-UG11 YbjD YbjD Feature: gene Location: 102820-103965 bp Feature: domain Description: ROK Location: 103030-103345 bp Feature: domain Description: ROK Location: 103030-103345 bp Feature: domain Description: ROK Location: 103381-103885 bp Feature: domain Description: ROK Location: 103381-103885 bp Feature: gene Location: 104163-105026 bp Feature: domain Description: MhpC Location: 104172-105009 bp Feature: domain Description: MhpC Location: 104172 -105009 bp Feature: gene Location: 105855-106586 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 105978-106416 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 105978-106416 bp Feature: gene Location: 108232-110052 bp Feature: domain Description: YbjD Location: 108235-108403 bp Feature: domain Description: YbjD Location: 1082 35-108403 bp Feature: domain Description: YbjD Location: 109150-109699 bp Feature: domain Description: YbjD Location: 109150-109699 bp Feature: gene Location: 110278-110571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ROK (pfam00480), MhpC (COG0596), RVT-UG11, YbjD (COG3593)

Seq: LFIP02000020.1 Bradyrhizobium embrapense strain SEMIA 6208 scaffold20.1, whole genome shotgun sequence (54346 bp)
Overview 1 RT 1: 13638-16763 bp Neighborhood of RT #1 [13638, 16876] RVT-GII GIIM RVT-GII DUF772 Feature: gene Location: 13638-13916 bp Feature: gene Location: 13913-14833 bp Feature: gene Location: 15048-15674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15051-15465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15051-15465 bp Feature: domain Description: GIIM Note: maturase Location: 15573-15672 bp Feature: domain Description: GIIM Note: maturase Location: 15573 -15672 bp Feature: gene Location: 15690-16076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16074 bp Feature: gene Location: 16149-16397 bp Feature: gene Location: 16496-16876 bp Feature: domain Description: DUF772 Location: 16652-16763 bp Feature: domain Description: DUF772 Location: 16652-16763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)