myRT

myRT report for GCA_001189245.1_ASM118924v1

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Seq: LFIQ01000010.1 Bradyrhizobium pachyrhizi strain PAC 48 contig_110, whole genome shotgun sequence (51576 bp)
Overview 1 RT 1: 27672-31286 bp Neighborhood of RT #1 [27672, 31286] COG3547 DUF772 RVT-GII GIIM Feature: gene Location: 27672-28949 bp Feature: domain Description: COG3547 Location: 27957-28902 bp Feature: domain Description: COG3547 Location: 27957-28902 bp Feature: gene Location: 28860-29147 bp Feature: domain Description: DUF772 Location: 28911-29022 bp Feature: domain Description: DUF772 Location: 2891 1 -29022 bp Feature: gene Location: 29169-30422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29373-30030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29373-30030 bp Feature: domain Description: GIIM Note: maturase Location: 30111-30345 bp Feature: domain Description: GIIM Note: maturase Location: 301 1 1 -30345 bp Feature: gene Location: 30415-30984 bp Feature: gene Location: 30993-31286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: LFIQ01000088.1 Bradyrhizobium pachyrhizi strain PAC 48 contig_1215, whole genome shotgun sequence (215525 bp)
Overview 1 RT 1: 195058-200761 bp Neighborhood of RT #1 [195058, 201930] DUF3606 RVT-GII Intron_maturas2 ArdC Spo0J Feature: gene Location: 195058-195246 bp Feature: domain Description: DUF3606 Location: 195085-195241 bp Feature: domain Description: DUF3606 Location: 195085-1952 41 bp Feature: gene Location: 195290-195553 bp Feature: gene Location: 195812-197674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196079-196910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196079-196910 bp Feature: domain Description: Intron_maturas2 Location: 197024-197303 bp Feature: domain Description: Intron_maturas2 Location: 19702 4-197303 bp Feature: gene Location: 198749-199702 bp Feature: domain Description: ArdC Location: 198776-199694 bp Feature: domain Description: ArdC Location: 198776-199694 bp Feature: gene Location: 199810-201930 bp Feature: domain Description: Spo0J Location: 199849-200761 bp Feature: domain Description: Spo0J Location: 199849-2 00761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3606 (pfam12244), RVT-GII, Intron_maturas2 (pfam01348), ArdC (COG4227), Spo0J (COG1475)

Seq: LFIQ01000097.1 Bradyrhizobium pachyrhizi strain PAC 48 contig_1449, whole genome shotgun sequence (51527 bp)
Overview 1 RT 1: 15645-17882 bp Neighborhood of RT #1 [15645, 17882] DDE_Tnp_IS66_C PRiA4_ORF3 RVT-GII Feature: gene Location: 15645-15779 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15663-15732 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15663 -1573 2 bp Feature: gene Location: 15776-16378 bp Feature: domain Description: PRiA4_ORF3 Location: 15797-16304 bp Feature: domain Description: PRiA4_ORF3 Location: 15797-163 04 bp Feature: gene Location: 16987-17286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16993-17116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16993 -17116 bp Feature: gene Location: 17351-17509 bp Feature: gene Location: 17601-17882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), PRiA4_ORF3 (pfam07929), RVT-GII

Seq: LFIQ01000059.1 Bradyrhizobium pachyrhizi strain PAC 48 contig_709, whole genome shotgun sequence (119489 bp)
Overview 1 RT 1: 38015-41161 bp 2 RT 2: 112631-115730 bp Neighborhood of RT #1 [38015, 41161] ThiF RVT-GII GIIM ThiF_MoeB_HesA_family Neighborhood of RT #2 [112631, 115750] DDE_Tnp_IS66 DDE_Tnp_IS66_C DDE_Tnp_IS66 RVT-GII GIIM PRK09039 COG3436 Feature: gene Location: 38015-38515 bp Feature: gene Location: 38655-39263 bp Feature: domain Description: ThiF Location: 38661-39201 bp Feature: domain Description: ThiF Location: 38661-39201 bp Feature: gene Location: 39311-40420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39320-39788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39320-39788 bp Feature: domain Description: GIIM Note: maturase Location: 39863-40067 bp Feature: domain Description: GIIM Note: maturase Location: 39863-4 0067 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 40271-40403 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 4 0271-4 04 03 bp Feature: gene Location: 40429-40983 bp Feature: gene Location: 41012-41161 bp Feature: gene Location: 112631-113014 bp Feature: domain Description: DDE_Tnp_IS66 Location: 112637-112835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 112637-112835 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112856-112967 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112856-112967 bp Feature: gene Location: 113069-113632 bp Feature: domain Description: DDE_Tnp_IS66 Location: 113219-113618 bp Feature: domain Description: DDE_Tnp_IS66 Location: 113219-113618 bp Feature: gene Location: 113666-114826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113873-114527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113873-114 527 bp Feature: domain Description: GIIM Note: maturase Location: 114614-114812 bp Feature: domain Description: GIIM Note: maturase Location: 114 614 -114 812 bp Feature: gene Location: 114896-115054 bp Feature: gene Location: 115079-115750 bp Feature: domain Description: PRK09039 Location: 115097-115388 bp Feature: domain Description: PRK09039 Location: 115097-115388 bp Feature: domain Description: COG3436 Location: 115409-115730 bp Feature: domain Description: COG34 36 Location: 1154 09-115730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiF (pfam00899), RVT-GII, GIIM (pfam08388), ThiF_MoeB_HesA_family (cd00757), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK09039 (peptidoglycan -binding protein), COG3436 (Transposase )