myRT

myRT report for GCA_001190825.1_ASM119082v1

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Seq: CP011326.1 Streptococcus agalactiae strain YM001 genome (2047957 bp)
Overview 1 RT 1: 91971-99790 bp 2 RT 2: 514463-521488 bp 3 RT 3: 528818-535020 bp 4 RT 4: 567296-574668 bp 5 RT 5: 746659-752699 bp 6 RT 6: 915553-922485 bp 7 RT 7: 1495636-1502807 bp 8 RT 8: 1548183-1556724 bp 9 RT 9: 1974699-1980479 bp Neighborhood of RT #1 [91971, 99813] RVT-GII GIIM NTP_transf_6 DUF2992 RVT-GII GIIM PRK08295 PhoE Neighborhood of RT #2 [514463, 521493] murG FtsQ RVT-GII GIIM FtsA PRK09330 Neighborhood of RT #3 [528818, 535025] McsA ClpA YkuJ RVT-GII GIIM HisM GlnQ Neighborhood of RT #4 [567296, 574682] TTHA1623-like_MBL-fold PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #5 [746659, 752701] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #6 [915553, 922490] PRK11856 lipoamide_DH lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #7 [1495636, 1502812] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #8 [1548183, 1556726] MurC RVT-GII GIIM HepA Der Neighborhood of RT #9 [1974699, 1980487] rpmF rpmG RVT-GII GIIM Surf_Exclu_PgrA Surf_Exclu_PgrA Surf_Exclu_PgrA LPXTG_anchor Feature: gene Location: 91971-93248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92175-92790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 75-92790 bp Feature: domain Description: GIIM Note: maturase Location: 92844-93060 bp Feature: domain Description: GIIM Note: maturase Location: 92844-93060 bp Feature: gene Location: 93686-94117 bp Feature: gene Location: 95273-95824 bp Feature: domain Description: NTP_transf_6 Location: 95333-95813 bp Feature: domain Description: NTP_transf_6 Location: 95333-9581 3 bp Feature: gene Location: 96044-96463 bp Feature: domain Description: DUF2992 Location: 96053-96461 bp Feature: domain Description: DUF2992 Location: 96053-96461 bp Feature: gene Location: 97027-98304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97231-97846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97231 -97846 bp Feature: domain Description: GIIM Note: maturase Location: 97900-98116 bp Feature: domain Description: GIIM Note: maturase Location: 97900-981 1 6 bp Feature: gene Location: 98520-98999 bp Feature: domain Description: PRK08295 Location: 98535-98760 bp Feature: domain Description: PRK08295 Location: 98535-98760 bp Feature: gene Location: 99121-99813 bp Feature: domain Description: PhoE Location: 99130-99790 bp Feature: domain Description: PhoE Location: 991 30-99790 bp Feature: gene Location: 514463-515539 bp Feature: domain Description: murG Location: 514472-515507 bp Feature: domain Description: murG Location: 51 4472-51 5507 bp Feature: gene Location: 515543-516670 bp Feature: domain Description: FtsQ Location: 515789-516503 bp Feature: domain Description: FtsQ Location: 51 5789-51 6503 bp Feature: gene Location: 517240-518517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517444-518059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7444-51 8059 bp Feature: domain Description: GIIM Note: maturase Location: 518113-518329 bp Feature: domain Description: GIIM Note: maturase Location: 51 81 1 3-51 8329 bp Feature: gene Location: 518818-520191 bp Feature: domain Description: FtsA Location: 518821-520186 bp Feature: domain Description: FtsA Location: 51 8821 -5201 86 bp Feature: gene Location: 520213-521493 bp Feature: domain Description: PRK09330 Location: 520225-521488 bp Feature: domain Description: PRK09330 Location: 520225-521 488 bp Feature: gene Location: 528818-531079 bp Feature: domain Description: McsA Location: 528821-528920 bp Feature: domain Description: McsA Location: 528821 -528920 bp Feature: domain Description: ClpA Location: 529118-531032 bp Feature: domain Description: ClpA Location: 5291 1 8-531 032 bp Feature: gene Location: 531377-531607 bp Feature: domain Description: YkuJ Location: 531383-531605 bp Feature: domain Description: YkuJ Location: 531 383-531 605 bp Feature: gene Location: 532157-533434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532361-532976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532361 -532976 bp Feature: domain Description: GIIM Note: maturase Location: 533030-533246 bp Feature: domain Description: GIIM Note: maturase Location: 533030-533246 bp Feature: gene Location: 533606-534298 bp Feature: domain Description: HisM Location: 533615-534275 bp Feature: domain Description: HisM Location: 53361 5-534275 bp Feature: gene Location: 534291-535025 bp Feature: domain Description: GlnQ Location: 534306-535020 bp Feature: domain Description: GlnQ Location: 534306-535020 bp Feature: gene Location: 567296-567931 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 567332-567923 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 567332-567923 bp Feature: gene Location: 568162-568926 bp Feature: domain Description: PRK08643 Location: 568165-568924 bp Feature: domain Description: PRK08643 Location: 5681 65-568924 bp Feature: gene Location: 569489-570766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569693-570308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569693-570308 bp Feature: domain Description: GIIM Note: maturase Location: 570362-570578 bp Feature: domain Description: GIIM Note: maturase Location: 570362-570578 bp Feature: gene Location: 570896-573403 bp Feature: domain Description: PRK07246 Location: 570941-573401 bp Feature: domain Description: PRK07246 Location: 570941 -573401 bp Feature: gene Location: 573489-574682 bp Feature: domain Description: PRK05764 Location: 573495-574668 bp Feature: domain Description: PRK05764 Location: 573495-574668 bp Feature: gene Location: 746659-747483 bp Feature: domain Description: Cof Location: 746668-747469 bp Feature: domain Description: Cof Location: 746668-747469 bp Feature: gene Location: 747483-749093 bp Feature: domain Description: PRK10416 Location: 747807-749082 bp Feature: domain Description: PRK1 041 6 Location: 747807-749082 bp Feature: gene Location: 749644-750921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749848-750463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749848-750463 bp Feature: domain Description: GIIM Note: maturase Location: 750517-750733 bp Feature: domain Description: GIIM Note: maturase Location: 75051 7-750733 bp Feature: gene Location: 750987-751799 bp Feature: domain Description: YcgQ Location: 750990-751797 bp Feature: domain Description: YcgQ Location: 750990-751 797 bp Feature: gene Location: 751799-752701 bp Feature: domain Description: YraQ Location: 751802-752699 bp Feature: domain Description: YraQ Location: 751 802-752699 bp Feature: gene Location: 915553-917310 bp Feature: domain Description: PRK11856 Location: 915556-915904 bp Feature: domain Description: PRK1 1 856 Location: 91 5556-91 5904 bp Feature: domain Description: lipoamide_DH Location: 915931-917290 bp Feature: domain Description: lipoamide_DH Location: 91 5931 -91 7290 bp Feature: gene Location: 917408-918397 bp Feature: domain Description: lipoyltrans Location: 917423-918371 bp Feature: domain Description: lipoyltrans Location: 91 7423-91 8371 bp Feature: gene Location: 919019-920296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919223-919838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 9223-91 9838 bp Feature: domain Description: GIIM Note: maturase Location: 919892-920108 bp Feature: domain Description: GIIM Note: maturase Location: 91 9892-9201 08 bp Feature: gene Location: 920362-921147 bp Feature: domain Description: COG3442 Location: 920410-921136 bp Feature: domain Description: COG3442 Location: 92041 0-921 1 36 bp Feature: gene Location: 921147-922490 bp Feature: domain Description: MurE Location: 921180-922485 bp Feature: domain Description: MurE Location: 921 1 80-922485 bp Feature: gene Location: 1495636-1496313 bp Feature: domain Description: DUF4956 Location: 1495723-1496086 bp Feature: domain Description: DUF4956 Location: 1 495723-1 496086 bp Feature: gene Location: 1496365-1497060 bp Feature: domain Description: PolyPPase_VTC_like Location: 1496383-1497025 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 496383-1 497025 bp Feature: gene Location: 1497429-1498706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1497633-1498248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 497633-1 498248 bp Feature: domain Description: GIIM Note: maturase Location: 1498302-1498518 bp Feature: domain Description: GIIM Note: maturase Location: 1 498302-1 49851 8 bp Feature: gene Location: 1499282-1500619 bp Feature: domain Description: Branch_AA_trans Location: 1499291-1500575 bp Feature: domain Description: Branch_AA_trans Location: 1 499291 -1 500575 bp Feature: gene Location: 1500815-1502812 bp Feature: domain Description: PRK12267 Location: 1500824-1502807 bp Feature: domain Description: PRK1 2267 Location: 1 500824-1 502807 bp Feature: gene Location: 1548183-1549514 bp Feature: domain Description: MurC Location: 1548192-1549488 bp Feature: domain Description: MurC Location: 1 5481 92-1 549488 bp Feature: gene Location: 1549524-1550141 bp Feature: gene Location: 1550313-1551590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1550517-1551132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 55051 7-1 551 1 32 bp Feature: domain Description: GIIM Note: maturase Location: 1551186-1551402 bp Feature: domain Description: GIIM Note: maturase Location: 1 551 1 86-1 551 402 bp Feature: gene Location: 1552163-1555261 bp Feature: domain Description: HepA Location: 1553705-1555253 bp Feature: domain Description: HepA Location: 1 553705-1 555253 bp Feature: gene Location: 1555416-1556726 bp Feature: domain Description: Der Location: 1555419-1556724 bp Feature: domain Description: Der Location: 1 55541 9-1 556724 bp Feature: gene Location: 1974699-1974881 bp Feature: domain Description: rpmF Location: 1974702-1974864 bp Feature: domain Description: rpmF Location: 1 974702-1 974864 bp Feature: gene Location: 1974897-1975046 bp Feature: domain Description: rpmG Location: 1974900-1975044 bp Feature: domain Description: rpmG Location: 1 974900-1 975044 bp Feature: gene Location: 1975346-1976623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975550-1976165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 975550-1 9761 65 bp Feature: domain Description: GIIM Note: maturase Location: 1976219-1976435 bp Feature: domain Description: GIIM Note: maturase Location: 1 97621 9-1 976435 bp Feature: gene Location: 1977184-1977645 bp Feature: gene Location: 1977650-1980487 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1977752-1978127 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 977752-1 9781 27 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1978229-1978532 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 978229-1 978532 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1978604-1979813 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 978604-1 97981 3 bp Feature: domain Description: LPXTG_anchor Location: 1980386-1980479 bp Feature: domain Description: LPXTG_anchor Location: 1 980386-1 980479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NTP_transf_6 (pfam06042), DUF2992 (pfam11208), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), murG (TIGR01133), FtsQ (pfam03799), FtsA (smart00842), PRK09330 (cell division protein FtsZ; Validated)
McsA (COG3880), ClpA (TIGR02639), YkuJ (COG4703), HisM (COG0765), GlnQ (COG1126), TTHA1623-like_MBL-fold (cd16322), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), Cof (COG0561)
PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750)
Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), MurC (COG0773), HepA (COG0553), Der (COG1160), rpmF (PRK12286), rpmG (PRK00595), Surf_Exclu_PgrA (TIGR04320), LPXTG_anchor (TIGR01167)