myRT

myRT report for GCA_001192635.1_6753_1_5

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Seq: CRJA01000006.1 Streptococcus pneumoniae genome assembly 6753_1#5, scaffold ERS020979SCcontig000006, whole genome shotgun sequence (79043 bp)
Overview 1 RT 1: 310-4399 bp Neighborhood of RT #1 [310, 4416] RVT-GII GIIM lipoyltrans AceF lipoamide_DH Feature: gene Location: 310-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-1129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 4-1 1 29 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 83-1 396 bp Feature: gene Location: 1653-2642 bp Feature: domain Description: lipoyltrans Location: 1665-2613 bp Feature: domain Description: lipoyltrans Location: 1 665-261 3 bp Feature: gene Location: 2713-4416 bp Feature: domain Description: AceF Location: 2716-3013 bp Feature: domain Description: AceF Location: 271 6-301 3 bp Feature: domain Description: lipoamide_DH Location: 3049-4399 bp Feature: domain Description: lipoamide_DH Location: 3049-4399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), AceF (COG0508), lipoamide_DH (TIGR01350), RVT-GII, GIIM (pfam08388)

Seq: CRJA01000010.1 Streptococcus pneumoniae genome assembly 6753_1#5, scaffold ERS020979SCcontig000010, whole genome shotgun sequence (64365 bp)
Overview 1 RT 1: 4246-9064 bp Neighborhood of RT #1 [4246, 9072] PucR hyperosmo_Ebh RVT-GII GIIM rpsA DUF2969 Feature: gene Location: 4246-5130 bp Feature: domain Description: PucR Location: 4258-5107 bp Feature: domain Description: PucR Location: 42 58-5107 bp Feature: gene Location: 5267-5866 bp Feature: domain Description: hyperosmo_Ebh Location: 5315-5858 bp Feature: domain Description: hyperosmo_Ebh Location: 5315-5858 bp Feature: gene Location: 6407-7090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6437-6731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6437-6731 bp Feature: domain Description: GIIM Note: maturase Location: 6785-6998 bp Feature: domain Description: GIIM Note: maturase Location: 6785-6998 bp Feature: gene Location: 7267-8469 bp Feature: domain Description: rpsA Location: 7270-8458 bp Feature: domain Description: rpsA Location: 72 70-8458 bp Feature: gene Location: 8842-9072 bp Feature: domain Description: DUF2969 Location: 8845-9064 bp Feature: domain Description: DUF2 969 Location: 8845-9064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PucR (pfam07905), hyperosmo_Ebh (TIGR04264), RVT-GII, GIIM (pfam08388), rpsA (TIGR00717), DUF2969 (pfam11184)

Seq: CRJA01000035.1 Streptococcus pneumoniae genome assembly 6753_1#5, scaffold ERS020979SCcontig000035, whole genome shotgun sequence (14156 bp)
Overview 1 RT 1: 8682-13848 bp Neighborhood of RT #1 [8682, 14018] Phage_lysozyme2 PRK08581 RVT-GII cas_Csn1 Feature: gene Location: 8682-9539 bp Feature: gene Location: 9651-11387 bp Feature: domain Description: Phage_lysozyme2 Location: 10491-11004 bp Feature: domain Description: Phage_lysozyme2 Location: 10491-11004 bp Feature: domain Description: PRK08581 Location: 11121-11370 bp Feature: domain Description: PRK08581 Location: 11121-113 70 bp Feature: gene Location: 12096-14018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12423-13158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12423 -13 158 bp Feature: domain Description: cas_Csn1 Location: 13569-13848 bp Feature: domain Description: cas_Csn1 Location: 13 569-13 848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, cas_Csn1 (TIGR01865), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)