myRT

myRT report for GCA_001192935.1_ASM119293v1

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Seq: BBYQ01000035.1 Nocardia seriolae U-1 DNA, contig: contig00035, whole genome shotgun sequence (2065 bp)
Overview 1 RT 1: 83-1431 bp Neighborhood of RT #1 [83, 2065] RVT-GII DDE_5 Feature: gene Location: 83-724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-695 bp Feature: gene Location: 744-2065 bp Feature: domain Description: DDE_5 Location: 807-1431 bp Feature: domain Description: DDE_5 Location: 807-1 431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII

Seq: BBYQ01000124.1 Nocardia seriolae U-1 DNA, contig: contig00124, whole genome shotgun sequence (25486 bp)
Overview 1 RT 1: 15-3175 bp Neighborhood of RT #1 [15, 3276] RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 DUF4096 Feature: gene Location: 15-245 bp Feature: gene Location: 262-2046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 3-132 1 bp Feature: domain Description: Intron_maturas2 Location: 1438-1651 bp Feature: domain Description: Intron_maturas2 Location: 1438-1651 bp Feature: domain Description: HNHc Note: nucleases Location: 1846-2002 bp Feature: domain Description: HNHc Note: nucleases Location: 1846-2 002 bp Feature: gene Location: 2504-2839 bp Feature: domain Description: DDE_Tnp_1 Location: 2510-2759 bp Feature: domain Description: DDE_Tnp_1 Location: 2 510-2 759 bp Feature: gene Location: 2914-3276 bp Feature: domain Description: DUF4096 Location: 2947-3175 bp Feature: domain Description: DUF4096 Location: 2 947-3175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4096 (pfam13340)

Seq: BBYQ01000178.1 Nocardia seriolae U-1 DNA, contig: contig00178, whole genome shotgun sequence (13343 bp)
Overview 1 RT 1: 2822-6751 bp Neighborhood of RT #1 [2822, 6786] Tra5 YkfC RVT-GII PHA02517 Tra8 Tra8 Tra8 Feature: gene Location: 2822-3586 bp Feature: domain Description: Tra5 Location: 2828-3233 bp Feature: domain Description: Tra5 Location: 2828-3 23 3 bp Feature: gene Location: 4200-4484 bp Feature: domain Description: YkfC Location: 4263-4422 bp Feature: domain Description: YkfC Location: 4263 -4422 bp Feature: gene Location: 4481-5041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4529-4979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4529-4979 bp Feature: gene Location: 5051-5296 bp Feature: domain Description: PHA02517 Location: 5060-5264 bp Feature: domain Description: PHA02517 Location: 5060-5264 bp Feature: gene Location: 5473-6786 bp Feature: domain Description: Tra8 Location: 5626-5887 bp Feature: domain Description: Tra8 Location: 5626-5887 bp Feature: domain Description: Tra8 Location: 5986-6352 bp Feature: domain Description: Tra8 Location: 5986-63 52 bp Feature: domain Description: Tra8 Location: 6418-6751 bp Feature: domain Description: Tra8 Location: 6418-6751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826)