myRT

myRT report for GCA_001193055.1_6755_3_22

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Seq: CRMX01000015.1 Streptococcus pneumoniae genome assembly 6755_3#22, scaffold ERS020396SCcontig000015, whole genome shotgun sequence (55524 bp)
Overview 1 RT 1: 50274-55266 bp Neighborhood of RT #1 [50274, 55358] EriC TrkA_C xerS RVT-GII GIIM Feature: gene Location: 50274-51824 bp Feature: domain Description: EriC Location: 50367-51579 bp Feature: domain Description: EriC Location: 50367-51 579 bp Feature: domain Description: TrkA_C Location: 51624-51819 bp Feature: domain Description: TrkA_C Location: 51 624-51 81 9 bp Feature: gene Location: 52408-53478 bp Feature: domain Description: xerS Location: 52411-53476 bp Feature: domain Description: xerS Location: 5241 1 -53476 bp Feature: gene Location: 54180-55358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54384-54999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54384-54999 bp Feature: domain Description: GIIM Note: maturase Location: 55053-55266 bp Feature: domain Description: GIIM Note: maturase Location: 55053-55266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388)

Seq: CRMX01000020.1 Streptococcus pneumoniae genome assembly 6755_3#22, scaffold ERS020396SCcontig000020, whole genome shotgun sequence (44930 bp)
Overview 1 RT 1: 16921-26178 bp Neighborhood of RT #1 [16921, 26360] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 16921-17511 bp Feature: domain Description: COG5340 Location: 16924-17356 bp Feature: domain Description: COG5340 Location: 1692 4-17356 bp Feature: gene Location: 17508-18353 bp Feature: domain Description: AbiEii Location: 17607-18306 bp Feature: domain Description: AbiEii Location: 17607-18306 bp Feature: gene Location: 18703-20625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19030-19765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19030-19765 bp Feature: domain Description: cas_Csn1 Location: 20176-20455 bp Feature: domain Description: cas_Csn1 Location: 2 0176-2 0455 bp Feature: gene Location: 21334-24012 bp Feature: domain Description: Peptidase_M23 Location: 22780-22984 bp Feature: domain Description: Peptidase_M2 3 Location: 2 2 780-2 2 984 bp Feature: domain Description: Phage_lysozyme2 Location: 23137-23644 bp Feature: domain Description: Phage_lysozyme2 Location: 2 3137-2 3644 bp Feature: domain Description: COG3942 Location: 23764-23995 bp Feature: domain Description: COG3942 Location: 2 3764-2 3995 bp Feature: gene Location: 24009-26360 bp Feature: domain Description: TraC-F-type Location: 24795-26178 bp Feature: domain Description: TraC-F-type Location: 2 4795-2 6178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)