myRT

myRT report for GCA_001193475.1_6805_4_3

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Seq: CRTO01000002.1 Streptococcus pneumoniae genome assembly 6805_4#3, scaffold ERS021169SCcontig000002, whole genome shotgun sequence (142645 bp)
Overview 1 RT 1: 43800-53969 bp Neighborhood of RT #1 [43800, 53969] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 43800-44351 bp Feature: gene Location: 44401-49842 bp Feature: domain Description: N6_Mtase Location: 46393-46984 bp Feature: domain Description: N6_Mtase Location: 46393-46984 bp Feature: domain Description: COG4646 Location: 47575-49699 bp Feature: domain Description: COG4646 Location: 47575-49699 bp Feature: gene Location: 50340-52118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50601-51393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50601 -51 393 bp Feature: domain Description: Intron_maturas2 Location: 51498-51729 bp Feature: domain Description: Intron_maturas2 Location: 51 498-51 729 bp Feature: domain Description: HNHc Note: nucleases Location: 51894-52080 bp Feature: domain Description: HNHc Note: nucleases Location: 51 894-52080 bp Feature: gene Location: 52256-53599 bp Feature: domain Description: KOG1000 Location: 52535-52850 bp Feature: domain Description: KOG1 000 Location: 52535-52850 bp Feature: gene Location: 53670-53969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )