myRT

myRT report for GCA_001197695.1_6805_5_6

Download annotations/find similar RTs

Seq: CRUL01000012.1 Streptococcus pneumoniae genome assembly 6805_5#6, scaffold ERS021196SCcontig000012, whole genome shotgun sequence (60032 bp)
Overview 1 RT 1: 2207-9513 bp Neighborhood of RT #1 [2207, 9518] COG4868 LuxS RVT-GII GIIM xerS EriC TrkA_C Feature: gene Location: 2207-3691 bp Feature: domain Description: COG4868 Location: 2213-3689 bp Feature: domain Description: COG4868 Location: 221 3-3689 bp Feature: gene Location: 3786-4268 bp Feature: domain Description: LuxS Location: 3804-4263 bp Feature: domain Description: LuxS Location: 3804-4263 bp Feature: gene Location: 4434-5612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4638-5253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4638-5253 bp Feature: domain Description: GIIM Note: maturase Location: 5307-5520 bp Feature: domain Description: GIIM Note: maturase Location: 5307-5520 bp Feature: gene Location: 6314-7384 bp Feature: domain Description: xerS Location: 6317-7382 bp Feature: domain Description: xerS Location: 631 7-7382 bp Feature: gene Location: 7968-9518 bp Feature: domain Description: EriC Location: 8061-9273 bp Feature: domain Description: EriC Location: 8061 -9273 bp Feature: domain Description: TrkA_C Location: 9318-9513 bp Feature: domain Description: TrkA_C Location: 931 8-951 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4868 (Uncharacterized protein, UPF0371 family ), LuxS (pfam02664), RVT-GII, GIIM (pfam08388), xerS (PRK05084), EriC (cd01031), TrkA_C (pfam02080)

Seq: CRUL01000022.1 Streptococcus pneumoniae genome assembly 6805_5#6, scaffold ERS021196SCcontig000022, whole genome shotgun sequence (41683 bp)
Overview 1 RT 1: 18571-27855 bp Neighborhood of RT #1 [18571, 28010] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 18571-20922 bp Feature: domain Description: TraC-F-type Location: 19357-20740 bp Feature: domain Description: TraC-F-type Location: 19357-2 0740 bp Feature: gene Location: 20919-23597 bp Feature: domain Description: Peptidase_M23 Location: 22365-22569 bp Feature: domain Description: Peptidase_M2 3 Location: 2 2 365-2 2 569 bp Feature: domain Description: Phage_lysozyme2 Location: 22722-23229 bp Feature: domain Description: Phage_lysozyme2 Location: 2 2 72 2 -2 32 2 9 bp Feature: domain Description: COG3942 Location: 23349-23580 bp Feature: domain Description: COG3942 Location: 2 3349-2 3580 bp Feature: gene Location: 24306-26228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24633-25368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4633-2 5368 bp Feature: domain Description: cas_Csn1 Location: 25779-26058 bp Feature: domain Description: cas_Csn1 Location: 2 5779-2 6058 bp Feature: gene Location: 26578-27423 bp Feature: domain Description: AbiEii Location: 26677-27376 bp Feature: domain Description: AbiEii Location: 2 6677-2 7376 bp Feature: gene Location: 27420-28010 bp Feature: domain Description: COG5340 Location: 27423-27855 bp Feature: domain Description: COG5340 Location: 2 742 3-2 7855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )