myRT

myRT report for GCA_001198295.1_6753_1_24

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Seq: CRIX01000038.1 Streptococcus pneumoniae genome assembly 6753_1#24, scaffold ERS020998SCcontig000038, whole genome shotgun sequence (13111 bp)
Overview 1 RT 1: 108-3948 bp Neighborhood of RT #1 [108, 3965] RVT-GII GIIM lipoyltrans AceF lipoamide_DH Feature: gene Location: 108-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4-678 bp Feature: domain Description: GIIM Note: maturase Location: 732-945 bp Feature: domain Description: GIIM Note: maturase Location: 732-945 bp Feature: gene Location: 1202-2191 bp Feature: domain Description: lipoyltrans Location: 1214-2162 bp Feature: domain Description: lipoyltrans Location: 1 21 4-21 62 bp Feature: gene Location: 2262-3965 bp Feature: domain Description: AceF Location: 2265-2562 bp Feature: domain Description: AceF Location: 2265-2562 bp Feature: domain Description: lipoamide_DH Location: 2598-3948 bp Feature: domain Description: lipoamide_DH Location: 2598-3948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), lipoyltrans (TIGR00545), AceF (COG0508), lipoamide_DH (TIGR01350)

Seq: CRIX01000007.1 Streptococcus pneumoniae genome assembly 6753_1#24, scaffold ERS020998SCcontig000007, whole genome shotgun sequence (88092 bp)
Overview 1 RT 1: 50498-59782 bp Neighborhood of RT #1 [50498, 59937] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 50498-52849 bp Feature: domain Description: TraC-F-type Location: 51284-52667 bp Feature: domain Description: TraC-F-type Location: 512 84-52 667 bp Feature: gene Location: 52846-55524 bp Feature: domain Description: Peptidase_M23 Location: 54292-54496 bp Feature: domain Description: Peptidase_M2 3 Location: 542 92 -54496 bp Feature: domain Description: Phage_lysozyme2 Location: 54649-55156 bp Feature: domain Description: Phage_lysozyme2 Location: 54649-55156 bp Feature: domain Description: COG3942 Location: 55276-55507 bp Feature: domain Description: COG3942 Location: 552 76-55507 bp Feature: gene Location: 56233-58155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56560-57295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56560-572 95 bp Feature: domain Description: cas_Csn1 Location: 57706-57985 bp Feature: domain Description: cas_Csn1 Location: 57706-57985 bp Feature: gene Location: 58505-59350 bp Feature: domain Description: AbiEii Location: 58604-59303 bp Feature: domain Description: AbiEii Location: 58604-59303 bp Feature: gene Location: 59347-59937 bp Feature: domain Description: COG5340 Location: 59350-59782 bp Feature: domain Description: COG5340 Location: 59350-59782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )