myRT

myRT report for GCA_001219505.1_5299_3_1

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Seq: CTQJ01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 genome assembly 5299_3#1, scaffold ERS011642SCcontig000006, whole genome shotgun sequence (189809 bp)
Overview 1 RT 1: 2085-8427 bp Neighborhood of RT #1 [2085, 8429] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 2085-3785 bp Ori: CQP79766.1 Feature: domain Description: 5 Location: 3309-3603 bp Feature: domain Description: 5 Location: 3309-3603 bp Feature: gene Location: 4537-4722 bp Feature: gene Location: 4692-5456 bp Ori: CQP79806.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4815-5268 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 481 5-5268 bp Feature: gene Location: 5780-6286 bp Ori: CQP79830.1 Gene: mug Feature: domain Description: PRK10201 Location: 5783-6281 bp Feature: domain Description: PRK1 0201 Location: 5783-6281 bp Feature: gene Location: 6447-8429 bp Ori: CQP79847.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 6585-8427 bp Feature: domain Description: PRK05658 Location: 6585-8427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: CTQJ01000039.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 genome assembly 5299_3#1, scaffold ERS011642SCcontig000039, whole genome shotgun sequence (43735 bp)
Overview 1 RT 1: 6996-11846 bp Neighborhood of RT #1 [6996, 11917] PRK10473 RVT-Retrons INT_P4_C Feature: gene Location: 6996-8183 bp Ori: CQQ59284.1 Gene: mdtL Feature: domain Description: PRK10473 Location: 6999-8175 bp Feature: domain Description: PRK10473 Location: 6999-8175 bp Feature: gene Location: 8876-9037 bp Feature: gene Location: 8985-9920 bp Ori: CQQ59337.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9096-9681 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9096-9681 bp Feature: gene Location: 9920-10882 bp Feature: gene Location: 11207-11917 bp Ori: CQQ59381.1 Gene: intA_2 Feature: domain Description: INT_P4_C Location: 11315-11846 bp Feature: domain Description: INT_P4_C Location: 11315-11846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, INT_P4_C (cd00801)