myRT

myRT report for GCA_001219665.1_5388_1_6

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Seq: CTGN01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 genome assembly 5388_1#6, scaffold ERS011695SCcontig000001, whole genome shotgun sequence (358284 bp)
Overview 1 RT 1: 353648-357503 bp Neighborhood of RT #1 [353648, 357503] PRK05658 PRK10201 RVT-UG11 Feature: gene Location: 353648-355630 bp Ori: CQD99127.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 353786-355628 bp Feature: domain Description: PRK05658 Location: 353786-355628 bp Feature: gene Location: 355754-356260 bp Ori: CQD99143.1 Gene: mug Feature: domain Description: PRK10201 Location: 355757-356255 bp Feature: domain Description: PRK1 0201 Location: 355757-356255 bp Feature: gene Location: 356584-357348 bp Ori: CQD99160.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 356707-357160 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 356707-3571 60 bp Feature: gene Location: 357318-357503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11

Seq: CTGN01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 genome assembly 5388_1#6, scaffold ERS011695SCcontig000003, whole genome shotgun sequence (216201 bp)
Overview 1 RT 1: 44630-49480 bp Neighborhood of RT #1 [44630, 49551] PRK10473 RVT-Retrons INT_P4_C Feature: gene Location: 44630-45817 bp Ori: CQE07604.1 Gene: mdtL Feature: domain Description: PRK10473 Location: 44633-45809 bp Feature: domain Description: PRK10473 Location: 44633-45809 bp Feature: gene Location: 46510-46671 bp Feature: gene Location: 46619-47554 bp Ori: CQE07649.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46730-47315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46730-47315 bp Feature: gene Location: 47554-48516 bp Feature: gene Location: 48841-49551 bp Ori: CQE07686.1 Gene: intA_1 Feature: domain Description: INT_P4_C Location: 48949-49480 bp Feature: domain Description: INT_P4_C Location: 48949-49480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, INT_P4_C (cd00801)