myRT

myRT report for GCA_001221905.1_5275_2_8

Download annotations/find similar RTs

Seq: CTOD01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 genome assembly 5275_2#8, scaffold ERS011637SCcontig000023, whole genome shotgun sequence (81334 bp)
Overview 1 RT 1: 31804-36717 bp Neighborhood of RT #1 [31804, 36725] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31804-32514 bp Ori: CQN73153.1 Gene: intA_2 Feature: domain Description: INT_P4_C Location: 31912-32443 bp Feature: domain Description: INT_P4_C Location: 31 91 2-32443 bp Feature: gene Location: 32839-33801 bp Feature: gene Location: 33801-34736 bp Ori: CQN73200.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33912-34497 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3391 2-34497 bp Feature: gene Location: 34684-34845 bp Feature: gene Location: 35538-36725 bp Ori: CQN73243.1 Gene: mdtL Feature: domain Description: PRK10473 Location: 35541-36717 bp Feature: domain Description: PRK1 0473 Location: 35541 -3671 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: CTOD01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 genome assembly 5275_2#8, scaffold ERS011637SCcontig000003, whole genome shotgun sequence (251456 bp)
Overview 1 RT 1: 181405-187530 bp Neighborhood of RT #1 [181405, 187712] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 181405-183387 bp Ori: CQM92958.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 181543-183385 bp Feature: domain Description: PRK05658 Location: 181543-183385 bp Feature: gene Location: 183511-184017 bp Ori: CQM92985.1 Gene: mug Feature: domain Description: PRK10201 Location: 183514-184012 bp Feature: domain Description: PRK102 01 Location: 183514-184012 bp Feature: gene Location: 184341-185105 bp Ori: CQM93019.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 184464-184917 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 184464-184917 bp Feature: gene Location: 185075-185260 bp Feature: gene Location: 186012-187712 bp Ori: CQM93079.1 Feature: domain Description: 5 Location: 187236-187530 bp Feature: domain Description: 5 Location: 1872 36-187530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)