myRT

myRT report for GCA_001240925.1_Salmonella_enterica_CVM_N43829-R_v1.0

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Seq: LHEV01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N43829 N43829_contig_18, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 113-4922 bp Neighborhood of RT #1 [113, 4927] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 113-1075 bp Feature: gene Location: 1075-2010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 86-1 771 bp Feature: gene Location: 2812-3999 bp Feature: domain Description: PRK10473 Location: 2815-3991 bp Feature: domain Description: PRK1 0473 Location: 281 5-3991 bp Feature: gene Location: 3968-4927 bp Feature: domain Description: PRK10216 Location: 3971-4922 bp Feature: domain Description: PRK1 021 6 Location: 3971 -4922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: LHEV01000054.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N43829 N43829_contig_54, whole genome shotgun sequence (48774 bp)
Overview 1 RT 1: 25263-29511 bp Neighborhood of RT #1 [25263, 29513] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 25263-25685 bp Feature: domain Description: DUF1380 Location: 25266-25560 bp Feature: domain Description: DUF1380 Location: 2 52 66-2 5560 bp Feature: gene Location: 25682-25873 bp Feature: gene Location: 26151-27818 bp Feature: RT Description: RVT_N Location: 26199-26436 bp Feature: RT Description: RVT_N Location: 2 6199-2 6436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26487-27129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6487-2 712 9 bp Feature: domain Description: GIIM Note: maturase Location: 27180-27414 bp Feature: domain Description: GIIM Note: maturase Location: 2 7180-2 7414 bp Feature: domain Description: HNHc Note: nucleases Location: 27624-27783 bp Feature: domain Description: HNHc Note: nucleases Location: 2 762 4-2 7783 bp Feature: gene Location: 28392-28865 bp Feature: gene Location: 28986-29513 bp Feature: domain Description: PRK13732 Location: 28989-29511 bp Feature: domain Description: PRK13732 Location: 2 8989-2 9511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)