myRT

myRT report for GCA_001243175.1_Salmonella_enterica_CVM_N46829_v1.0

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Seq: LHIG01000028.1 Salmonella enterica subsp. enterica serovar Litchfield strain CVM N46829 N46829_contig_28, whole genome shotgun sequence (60709 bp)
Overview 1 RT 1: 52005-59243 bp Neighborhood of RT #1 [52005, 59245] CsgD RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 52005-52622 bp Feature: domain Description: CsgD Location: 52425-52599 bp Feature: domain Description: CsgD Location: 52425-52599 bp Feature: gene Location: 53330-53488 bp Feature: gene Location: 54357-55964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54648-55245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54648-55245 bp Feature: domain Description: TIR_2 Location: 55569-55929 bp Feature: domain Description: TIR_2 Location: 55569-55929 bp Feature: gene Location: 56577-58910 bp Feature: domain Description: Prim_Zn_Ribbon Location: 56667-56775 bp Feature: domain Description: Prim_Zn_Ribbon Location: 56667-56775 bp Feature: domain Description: COG3378 Location: 57384-58899 bp Feature: domain Description: COG3378 Location: 57384-58899 bp Feature: gene Location: 58925-59245 bp Feature: domain Description: DUF5375 Location: 58928-59243 bp Feature: domain Description: DUF5375 Location: 58928-59243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsgD (COG2771), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)