myRT

myRT report for GCA_001243255.1_Salmonella_enterica_CVM_N46834_v1.0

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Seq: LHIK01000019.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N46834 N46834_contig_19, whole genome shotgun sequence (35546 bp)
Overview 1 RT 1: 6048-10173 bp Neighborhood of RT #1 [6048, 10298] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 6048-6575 bp Feature: domain Description: PRK13732 Location: 6051-6573 bp Feature: domain Description: PRK1 3732 Location: 6051 -6573 bp Feature: gene Location: 6696-7169 bp Feature: gene Location: 7743-9410 bp Feature: RT Description: RVT_N Location: 7791-8028 bp Feature: RT Description: RVT_N Location: 7791 -8028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8079-8721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8079-8721 bp Feature: domain Description: GIIM Note: maturase Location: 8772-9006 bp Feature: domain Description: GIIM Note: maturase Location: 8772-9006 bp Feature: domain Description: HNHc Note: nucleases Location: 9216-9375 bp Feature: domain Description: HNHc Note: nucleases Location: 921 6-9375 bp Feature: gene Location: 9688-9879 bp Feature: gene Location: 9876-10298 bp Feature: domain Description: DUF1380 Location: 9879-10173 bp Feature: domain Description: DUF1 380 Location: 9879-1 01 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: LHIK01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N46834 N46834_contig_55, whole genome shotgun sequence (48807 bp)
Overview 1 RT 1: 113-4922 bp Neighborhood of RT #1 [113, 4927] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 113-1075 bp Feature: gene Location: 1075-2010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: gene Location: 2812-3999 bp Feature: domain Description: PRK10473 Location: 2815-3991 bp Feature: domain Description: PRK10473 Location: 2 815-3991 bp Feature: gene Location: 3968-4927 bp Feature: domain Description: PRK10216 Location: 3971-4922 bp Feature: domain Description: PRK102 16 Location: 3971-492 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)