myRT

myRT report for GCA_001244255.1_Salmonella_enterica_CVM_N48676_v1.0

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Seq: LHJZ01000044.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N48676 N48676_contig_44, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 113-4922 bp Neighborhood of RT #1 [113, 4927] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 113-1075 bp Feature: gene Location: 1075-2010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 86-1 771 bp Feature: gene Location: 2812-3999 bp Feature: domain Description: PRK10473 Location: 2815-3991 bp Feature: domain Description: PRK1 0473 Location: 281 5-3991 bp Feature: gene Location: 3968-4927 bp Feature: domain Description: PRK10216 Location: 3971-4922 bp Feature: domain Description: PRK1 021 6 Location: 3971 -4922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: LHJZ01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N48676 N48676_contig_38, whole genome shotgun sequence (25572 bp)
Overview 1 RT 1: 15265-19513 bp Neighborhood of RT #1 [15265, 19515] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 15265-15687 bp Feature: domain Description: DUF1380 Location: 15268-15562 bp Feature: domain Description: DUF1380 Location: 152 68-15562 bp Feature: gene Location: 15684-15875 bp Feature: gene Location: 16153-17820 bp Feature: RT Description: RVT_N Location: 16201-16438 bp Feature: RT Description: RVT_N Location: 162 01-16438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16489-17131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16489-17131 bp Feature: domain Description: GIIM Note: maturase Location: 17182-17416 bp Feature: domain Description: GIIM Note: maturase Location: 17182 -17416 bp Feature: domain Description: HNHc Note: nucleases Location: 17626-17785 bp Feature: domain Description: HNHc Note: nucleases Location: 1762 6-17785 bp Feature: gene Location: 18394-18867 bp Feature: gene Location: 18988-19515 bp Feature: domain Description: PRK13732 Location: 18991-19513 bp Feature: domain Description: PRK13732 Location: 18991-19513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)