myRT

myRT report for GCA_001244285.1_Salmonella_enterica_CVM_N48677_v1.0

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Seq: LHKA01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N48677 N48677_contig_15, whole genome shotgun sequence (10009 bp)
Overview 1 RT 1: 5217-9342 bp Neighborhood of RT #1 [5217, 9467] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 5217-5744 bp Feature: domain Description: PRK13732 Location: 5220-5742 bp Feature: domain Description: PRK1 3732 Location: 5220-5742 bp Feature: gene Location: 5865-6338 bp Feature: gene Location: 6912-8579 bp Feature: RT Description: RVT_N Location: 6960-7197 bp Feature: RT Description: RVT_N Location: 6960-71 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7248-7890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7248-7890 bp Feature: domain Description: GIIM Note: maturase Location: 7941-8175 bp Feature: domain Description: GIIM Note: maturase Location: 7941 -81 75 bp Feature: domain Description: HNHc Note: nucleases Location: 8385-8544 bp Feature: domain Description: HNHc Note: nucleases Location: 8385-8544 bp Feature: gene Location: 8857-9048 bp Feature: gene Location: 9045-9467 bp Feature: domain Description: DUF1380 Location: 9048-9342 bp Feature: domain Description: DUF1 380 Location: 9048-9342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: LHKA01000051.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N48677 N48677_contig_51, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 43815-48629 bp Neighborhood of RT #1 [43815, 48629] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 43815-44774 bp Feature: domain Description: PRK10216 Location: 43818-44769 bp Feature: domain Description: PRK102 16 Location: 43818-44769 bp Feature: gene Location: 44743-45930 bp Feature: domain Description: PRK10473 Location: 44746-45922 bp Feature: domain Description: PRK10473 Location: 44746-4592 2 bp Feature: gene Location: 46732-47667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-47428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-4742 8 bp Feature: gene Location: 47667-48629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons