myRT

myRT report for GCA_001244915.1_1.ECAD30.1

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Seq: CWHW01000036.1 Escherichia coli AD30 genome assembly 1.ECAD30.1, contig AD30_36, whole genome shotgun sequence (34193 bp)
Overview 1 RT 1: 23589-27332 bp Neighborhood of RT #1 [23589, 27343] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23589-24071 bp Feature: domain Description: SmpB Location: 23619-24066 bp Feature: domain Description: SmpB Location: 2361 9-24066 bp Feature: gene Location: 24205-24372 bp Feature: gene Location: 24757-25530 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24892-25345 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 24892-25345 bp Feature: gene Location: 25934-26152 bp Feature: domain Description: PRK09678 Location: 25937-26135 bp Feature: domain Description: PRK09678 Location: 25937-261 35 bp Feature: gene Location: 26243-27343 bp Feature: domain Description: D Location: 26249-27332 bp Feature: domain Description: D Location: 26249-27332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: CWHW01000041.1 Escherichia coli AD30 genome assembly 1.ECAD30.1, contig AD30_41, whole genome shotgun sequence (24555 bp)
Overview 1 RT 1: 8636-11844 bp Neighborhood of RT #1 [8636, 11844] Peptidase_S6 group_II_RT_mat RVT-GII RVT-GII Feature: gene Location: 8636-9130 bp Feature: domain Description: Peptidase_S6 Location: 8687-9113 bp Feature: domain Description: Peptidase_S6 Location: 8687-9113 bp Feature: gene Location: 9402-9974 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9408-9720 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9408-972 0 bp Feature: gene Location: 9946-10305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9949-10192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9949-10192 bp Feature: gene Location: 10322-10789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10595-10766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10595-10766 bp Feature: gene Location: 11115-11456 bp Feature: gene Location: 11527-11844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), group_II_RT_mat (TIGR04416), RVT-GII

Seq: CWHW01000072.1 Escherichia coli AD30 genome assembly 1.ECAD30.1, contig AD30_72, whole genome shotgun sequence (4297 bp)
Overview 1 RT 1: 2085-4295 bp Neighborhood of RT #1 [2085, 4294] InsE PHA02517 RVT-GII Feature: gene Location: 2085-2384 bp Feature: domain Description: InsE Location: 2115-2379 bp Feature: domain Description: InsE Location: 2115-23 79 bp Feature: gene Location: 2381-2848 bp Feature: domain Description: PHA02517 Location: 2447-2786 bp Feature: domain Description: PHA02517 Location: 2447-2786 bp Feature: gene Location: 3440-4294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3713-4295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 713 -4295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII