myRT

myRT report for GCA_001246225.1_Salmonella_enterica_CVM_N51254_v1.0

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Seq: LHMS01000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N51254 N51254_contig_48, whole genome shotgun sequence (48534 bp)
Overview 1 RT 1: 25023-29271 bp Neighborhood of RT #1 [25023, 29273] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 25023-25445 bp Feature: domain Description: DUF1380 Location: 25026-25320 bp Feature: domain Description: DUF1 380 Location: 25026-25320 bp Feature: gene Location: 25442-25633 bp Feature: gene Location: 25911-27578 bp Feature: RT Description: RVT_N Location: 25959-26196 bp Feature: RT Description: RVT_N Location: 25959-261 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26247-26889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26247-26889 bp Feature: domain Description: GIIM Note: maturase Location: 26940-27174 bp Feature: domain Description: GIIM Note: maturase Location: 26940-271 74 bp Feature: domain Description: HNHc Note: nucleases Location: 27384-27543 bp Feature: domain Description: HNHc Note: nucleases Location: 27384-27543 bp Feature: gene Location: 28152-28625 bp Feature: gene Location: 28746-29273 bp Feature: domain Description: PRK13732 Location: 28749-29271 bp Feature: domain Description: PRK1 3732 Location: 28749-29271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: LHMS01000031.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N51254 N51254_contig_31, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 113-4922 bp Neighborhood of RT #1 [113, 4927] RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 113-1075 bp Feature: gene Location: 1075-2010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: gene Location: 2812-3999 bp Feature: domain Description: PRK10473 Location: 2815-3991 bp Feature: domain Description: PRK10473 Location: 2 815-3991 bp Feature: gene Location: 3968-4927 bp Feature: domain Description: PRK10216 Location: 3971-4922 bp Feature: domain Description: PRK102 16 Location: 3971-492 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)