myRT

myRT report for GCA_001247385.1_8489_2_91

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Seq: CXMH01000219.1 Shigella sonnei genome assembly 8489_2#91, scaffold ERS153603SCcontig000219, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CTC03876.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3-1 070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CTC03902.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-41 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXMH01000197.1 Shigella sonnei genome assembly 8489_2#91, scaffold ERS153603SCcontig000197, whole genome shotgun sequence (6054 bp)
Overview 1 RT 1: 2250-5465 bp Neighborhood of RT #1 [2250, 5491] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2250-3230 bp Ori: CTC01025.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2427-2622 bp Feature: domain Description: sopB_N Location: 2 42 7-2 62 2 bp Feature: domain Description: ParB Location: 2835-3210 bp Feature: domain Description: ParB Location: 2 835-32 10 bp Feature: gene Location: 3486-3971 bp Ori: CTC01042.1 Feature: domain Description: COG3547 Location: 3504-3936 bp Feature: domain Description: COG3547 Location: 3504-3936 bp Feature: gene Location: 4260-4787 bp Ori: CTC01053.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4266-4410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 66-4410 bp Feature: domain Description: GIIM Note: maturase Location: 4488-4710 bp Feature: domain Description: GIIM Note: maturase Location: 4488-4710 bp Feature: gene Location: 4802-5491 bp Ori: CTC01066.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5003-5465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5003-5465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXMH01000292.1 Shigella sonnei genome assembly 8489_2#91, scaffold ERS153603SCcontig000292, whole genome shotgun sequence (2584 bp)
Overview 1 RT 1: 92-1261 bp Neighborhood of RT #1 [92, 1266] DDE_Tnp_1 RVT-GII Feature: gene Location: 92-232 bp Feature: gene Location: 255-737 bp Ori: CTC11192.1 Feature: domain Description: DDE_Tnp_1 Location: 426-669 bp Feature: domain Description: DDE_Tnp_1 Location: 426-669 bp Feature: gene Location: 1063-1266 bp Ori: CTC11205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171-1261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII