myRT

myRT report for GCA_001248315.1_5236_3_11

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Seq: CXBT01000081.1 Shigella sonnei genome assembly 5236_3#11, scaffold ERS009828SCcontig000081, whole genome shotgun sequence (18870 bp)
Overview 1 RT 1: 13364-18469 bp Neighborhood of RT #1 [13364, 18471] InsE PHA02517 RVT-GII ushA Feature: gene Location: 13364-13666 bp Ori: CSO85367.1 Feature: domain Description: InsE Location: 13367-13652 bp Feature: domain Description: InsE Location: 1 3367-1 3652 bp Feature: gene Location: 13702-14379 bp Ori: CSO85376.1 Feature: domain Description: PHA02517 Location: 13717-14362 bp Feature: domain Description: PHA0251 7 Location: 1 371 7-1 4362 bp Feature: gene Location: 14425-15519 bp Ori: CSO85384.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14692-15349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4692-1 5349 bp Feature: gene Location: 16698-16883 bp Feature: gene Location: 16852-18471 bp Ori: CSO85400.1 Gene: ushA_2 Feature: domain Description: ushA Location: 16867-18469 bp Feature: domain Description: ushA Location: 1 6867-1 8469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, ushA (PRK09558)

Seq: CXBT01000258.1 Shigella sonnei genome assembly 5236_3#11, scaffold ERS009828SCcontig000258, whole genome shotgun sequence (3211 bp)
Overview 1 RT 1: 787-1956 bp Neighborhood of RT #1 [787, 1961] DDE_Tnp_1 RVT-GII Feature: gene Location: 787-927 bp Feature: gene Location: 950-1432 bp Ori: CSP12321.1 Feature: domain Description: DDE_Tnp_1 Location: 1121-1364 bp Feature: domain Description: DDE_Tnp_1 Location: 112 1-1364 bp Feature: gene Location: 1758-1961 bp Ori: CSP12335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXBT01000197.1 Shigella sonnei genome assembly 5236_3#11, scaffold ERS009828SCcontig000197, whole genome shotgun sequence (5753 bp)
Overview 1 RT 1: 455-3676 bp Neighborhood of RT #1 [455, 3696] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 455-1144 bp Ori: CSP06144.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-1118 bp Feature: gene Location: 1159-1686 bp Ori: CSP06160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165-1309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165-13 09 bp Feature: domain Description: GIIM Note: maturase Location: 1387-1609 bp Feature: domain Description: GIIM Note: maturase Location: 13 87-1609 bp Feature: gene Location: 1975-2460 bp Ori: CSP06171.1 Feature: domain Description: COG3547 Location: 1993-2425 bp Feature: domain Description: COG3 547 Location: 1993 -2425 bp Feature: gene Location: 2716-3696 bp Ori: CSP06181.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2893-3088 bp Feature: domain Description: sopB_N Location: 2893 -3 088 bp Feature: domain Description: ParB Location: 3301-3676 bp Feature: domain Description: ParB Location: 3 3 01-3 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)