myRT

myRT report for GCA_001248445.1_Sg_201401573_GTGGCC_L001

Download annotations/find similar RTs

Seq: CWWE01000205.1 Shigella sonnei genome assembly Sg_201401573_GTGGCC_L001, scaffold SCcontig000205, whole genome shotgun sequence (5912 bp)
Overview 1 RT 1: 2150-5356 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CSI61257.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 2735-31 1 0 bp Feature: gene Location: 3386-3871 bp Ori: CSI61266.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 4160-4687 bp Ori: CSI61274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 66-431 0 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-461 0 bp Feature: gene Location: 4702-5391 bp Ori: CSI61282.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CWWE01000079.1 Shigella sonnei genome assembly Sg_201401573_GTGGCC_L001, scaffold SCcontig000079, whole genome shotgun sequence (20297 bp)
Overview 1 RT 1: 17368-19025 bp Neighborhood of RT #1 [17368, 19561] SLATT_5 RVT-UG17 Feature: gene Location: 17368-17535 bp Feature: gene Location: 17662-18213 bp Ori: CSI51213.1 Feature: domain Description: SLATT_5 Location: 17668-18184 bp Feature: domain Description: SLATT_5 Location: 17668-18184 bp Feature: gene Location: 18191-19561 bp Ori: CSI51218.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 18419-19025 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 18419-1902 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: CWWE01000315.1 Shigella sonnei genome assembly Sg_201401573_GTGGCC_L001, scaffold SCcontig000315, whole genome shotgun sequence (2100 bp)
Overview 1 RT 1: 861-1785 bp Neighborhood of RT #1 [861, 1955] RVT-GII Feature: gene Location: 861-1955 bp Ori: CSI66405.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128-1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128-1785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CWWE01000317.1 Shigella sonnei genome assembly Sg_201401573_GTGGCC_L001, scaffold SCcontig000317, whole genome shotgun sequence (1996 bp)
Overview 1 RT 1: 252-1817 bp Neighborhood of RT #1 [252, 1843] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 252-392 bp Feature: gene Location: 415-897 bp Ori: CSI66479.1 Feature: domain Description: DDE_Tnp_1 Location: 586-829 bp Feature: domain Description: DDE_Tnp_1 Location: 586-829 bp Feature: gene Location: 1223-1426 bp Ori: CSI66484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1331-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1331-14 21 bp Feature: gene Location: 1487-1843 bp Ori: CSI66489.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496-1817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 96-1817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII