myRT

myRT report for GCA_001248585.1_H14086038101

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Seq: CWTD01000267.1 Shigella sonnei genome assembly H14086038101, scaffold SCcontig000267, whole genome shotgun sequence (3120 bp)
Overview 1 RT 1: 90-2228 bp Neighborhood of RT #1 [90, 2254] Antirestrict RVT-GII RVT-GII Feature: gene Location: 90-335 bp Ori: CSF32332.1 Feature: domain Description: Antirestrict Location: 123-309 bp Feature: domain Description: Antirestrict Location: 1 23-309 bp Feature: gene Location: 749-889 bp Feature: gene Location: 1634-1837 bp Ori: CSF32371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 742-1 832 bp Feature: gene Location: 1898-2254 bp Ori: CSF32393.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 907-2228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII

Seq: CWTD01000209.1 Shigella sonnei genome assembly H14086038101, scaffold SCcontig000209, whole genome shotgun sequence (5336 bp)
Overview 1 RT 1: 837-5133 bp Neighborhood of RT #1 [837, 5150] ushA RVT-GII Tra5 Feature: gene Location: 837-2456 bp Ori: CSF23494.1 Gene: ushA_2 Feature: domain Description: ushA Location: 852-2454 bp Feature: domain Description: ushA Location: 852 -2 454 bp Feature: gene Location: 2425-2610 bp Feature: gene Location: 3789-4883 bp Ori: CSF23531.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-4713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4056-4713 bp Feature: gene Location: 4929-5150 bp Ori: CSF23547.1 Feature: domain Description: Tra5 Location: 4941-5133 bp Feature: domain Description: Tra5 Location: 4941-5133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CWTD01000043.1 Shigella sonnei genome assembly H14086038101, scaffold SCcontig000043, whole genome shotgun sequence (29151 bp)
Overview 1 RT 1: 516-3737 bp Neighborhood of RT #1 [516, 3757] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 516-1205 bp Ori: CSE85907.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717-1179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717-1179 bp Feature: gene Location: 1220-1747 bp Ori: CSE85915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226-13 70 bp Feature: domain Description: GIIM Note: maturase Location: 1448-1670 bp Feature: domain Description: GIIM Note: maturase Location: 1448-1670 bp Feature: gene Location: 2036-2521 bp Ori: CSE85921.1 Feature: domain Description: COG3547 Location: 2054-2486 bp Feature: domain Description: COG3 547 Location: 2054-2486 bp Feature: gene Location: 2777-3757 bp Ori: CSE85931.1 Gene: sopB_1 Feature: domain Description: sopB_N Location: 2954-3149 bp Feature: domain Description: sopB_N Location: 2954-3 149 bp Feature: domain Description: ParB Location: 3362-3737 bp Feature: domain Description: ParB Location: 3 3 62-3 73 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)