myRT

myRT report for GCA_001248605.1_8489_2_90

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Seq: CXMF01000205.1 Shigella sonnei genome assembly 8489_2#90, scaffold ERS153602SCcontig000205, whole genome shotgun sequence (5166 bp)
Overview 1 RT 1: 655-4951 bp Neighborhood of RT #1 [655, 4968] ushA RVT-GII Tra5 Feature: gene Location: 655-2274 bp Ori: CTB84659.1 Gene: ushA_2 Feature: domain Description: ushA Location: 670-2272 bp Feature: domain Description: ushA Location: 670-2272 bp Feature: gene Location: 2243-2428 bp Feature: gene Location: 3607-4701 bp Ori: CTB84694.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874-4531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874-4531 bp Feature: gene Location: 4747-4968 bp Ori: CTB84712.1 Feature: domain Description: Tra5 Location: 4759-4951 bp Feature: domain Description: Tra5 Location: 4759-4951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXMF01000143.1 Shigella sonnei genome assembly 8489_2#90, scaffold ERS153602SCcontig000143, whole genome shotgun sequence (10436 bp)
Overview 1 RT 1: 272-5238 bp Neighborhood of RT #1 [272, 5255] DDE_Tnp_1 RVT-GII HTH_23 HTH_33 DDE_3 WzzB Feature: gene Location: 272-412 bp Feature: gene Location: 435-917 bp Ori: CTB70279.1 Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: gene Location: 1243-1446 bp Ori: CTB70298.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-1441 bp Feature: gene Location: 2769-3800 bp Ori: CTB70318.1 Feature: domain Description: HTH_23 Location: 2847-2988 bp Feature: domain Description: HTH_2 3 Location: 2 847-2 988 bp Feature: domain Description: HTH_33 Location: 3093-3240 bp Feature: domain Description: HTH_33 Location: 3093-32 40 bp Feature: domain Description: DDE_3 Location: 3300-3717 bp Feature: domain Description: DDE_3 Location: 3300-3717 bp Feature: gene Location: 4149-5255 bp Ori: CTB70342.1 Gene: wzz Feature: domain Description: WzzB Location: 4221-5238 bp Feature: domain Description: WzzB Location: 42 2 1-52 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), WzzB (COG3765)

Seq: CXMF01000041.1 Shigella sonnei genome assembly 8489_2#90, scaffold ERS153602SCcontig000041, whole genome shotgun sequence (32751 bp)
Overview 1 RT 1: 28989-32204 bp Neighborhood of RT #1 [28989, 32230] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 28989-29969 bp Ori: CTB17996.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 29166-29361 bp Feature: domain Description: sopB_N Location: 29166-293 61 bp Feature: domain Description: ParB Location: 29574-29949 bp Feature: domain Description: ParB Location: 29574-29949 bp Feature: gene Location: 30225-30710 bp Ori: CTB18011.1 Feature: domain Description: COG3547 Location: 30243-30675 bp Feature: domain Description: COG3 547 Location: 3 0243 -3 0675 bp Feature: gene Location: 30999-31526 bp Ori: CTB18026.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31005-31149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1005-3 1149 bp Feature: domain Description: GIIM Note: maturase Location: 31227-31449 bp Feature: domain Description: GIIM Note: maturase Location: 3 1227-3 1449 bp Feature: gene Location: 31541-32230 bp Ori: CTB18040.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31742-32204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1742-3 2204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)