myRT

myRT report for GCA_001248925.1_5236_3_12

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Seq: CXBZ01000197.1 Shigella sonnei genome assembly 5236_3#12, scaffold ERS009829SCcontig000197, whole genome shotgun sequence (5785 bp)
Overview 1 RT 1: 475-3696 bp Neighborhood of RT #1 [475, 3716] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 475-1164 bp Ori: CSP58975.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676-1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676-1 1 38 bp Feature: gene Location: 1179-1706 bp Ori: CSP58991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 85-1 329 bp Feature: domain Description: GIIM Note: maturase Location: 1407-1629 bp Feature: domain Description: GIIM Note: maturase Location: 1 407-1 629 bp Feature: gene Location: 1995-2480 bp Ori: CSP59005.1 Feature: domain Description: COG3547 Location: 2013-2445 bp Feature: domain Description: COG3547 Location: 201 3-2445 bp Feature: gene Location: 2736-3716 bp Ori: CSP59017.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2913-3108 bp Feature: domain Description: sopB_N Location: 291 3-31 08 bp Feature: domain Description: ParB Location: 3321-3696 bp Feature: domain Description: ParB Location: 3321 -3696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXBZ01000209.1 Shigella sonnei genome assembly 5236_3#12, scaffold ERS009829SCcontig000209, whole genome shotgun sequence (5019 bp)
Overview 1 RT 1: 547-4843 bp Neighborhood of RT #1 [547, 4860] ushA RVT-GII Tra5 Feature: gene Location: 547-2166 bp Ori: CSP60572.1 Gene: ushA_2 Feature: domain Description: ushA Location: 562-2164 bp Feature: domain Description: ushA Location: 562 -2 164 bp Feature: gene Location: 2135-2320 bp Feature: gene Location: 3499-4593 bp Ori: CSP60602.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-4423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766-442 3 bp Feature: gene Location: 4639-4860 bp Ori: CSP60620.1 Feature: domain Description: Tra5 Location: 4651-4843 bp Feature: domain Description: Tra5 Location: 4651-4843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXBZ01000261.1 Shigella sonnei genome assembly 5236_3#12, scaffold ERS009829SCcontig000261, whole genome shotgun sequence (3242 bp)
Overview 1 RT 1: 801-1970 bp Neighborhood of RT #1 [801, 1975] DDE_Tnp_1 RVT-GII Feature: gene Location: 801-941 bp Feature: gene Location: 964-1446 bp Ori: CSP66026.1 Feature: domain Description: DDE_Tnp_1 Location: 1135-1378 bp Feature: domain Description: DDE_Tnp_1 Location: 113 5-13 78 bp Feature: gene Location: 1772-1975 bp Ori: CSP66037.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880-1970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880-1970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII