myRT

myRT report for GCA_001249155.1_8489_2_85

Download annotations/find similar RTs

Seq: CXMB01000202.1 Shigella sonnei genome assembly 8489_2#85, scaffold ERS153597SCcontig000202, whole genome shotgun sequence (5429 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CTB30703.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Ori: CTB30720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 2084-2569 bp Ori: CTB30734.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Feature: gene Location: 2825-3805 bp Ori: CTB30750.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002-31 97 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 341 0-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXMB01000214.1 Shigella sonnei genome assembly 8489_2#85, scaffold ERS153597SCcontig000214, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CTB32277.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CTB32313.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2 588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXMB01000290.1 Shigella sonnei genome assembly 8489_2#85, scaffold ERS153597SCcontig000290, whole genome shotgun sequence (2741 bp)
Overview 1 RT 1: 252-1421 bp Neighborhood of RT #1 [252, 1426] DDE_Tnp_1 RVT-GII Feature: gene Location: 252-392 bp Feature: gene Location: 415-897 bp Ori: CTB40959.1 Feature: domain Description: DDE_Tnp_1 Location: 586-829 bp Feature: domain Description: DDE_Tnp_1 Location: 586-829 bp Feature: gene Location: 1223-1426 bp Ori: CTB40975.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1331-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 1-1421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII