myRT

myRT report for GCA_001249235.1_5417_3_3

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Seq: CXET01000274.1 Shigella sonnei genome assembly 5417_3#3, scaffold ERS008188SCcontig000274, whole genome shotgun sequence (2686 bp)
Overview 1 RT 1: 211-1380 bp Neighborhood of RT #1 [211, 1385] DDE_Tnp_1 RVT-GII Feature: gene Location: 211-351 bp Feature: gene Location: 374-856 bp Ori: CSS98081.1 Feature: domain Description: DDE_Tnp_1 Location: 545-788 bp Feature: domain Description: DDE_Tnp_1 Location: 545-788 bp Feature: gene Location: 1182-1385 bp Ori: CSS98101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1290-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 290-1 380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXET01000142.1 Shigella sonnei genome assembly 5417_3#3, scaffold ERS008188SCcontig000142, whole genome shotgun sequence (9920 bp)
Overview 1 RT 1: 3164-9776 bp Neighborhood of RT #1 [3164, 9838] Ail_Lom phage_tail_N phage_tail_N Collar RVT-Retrons TIR_2 Feature: gene Location: 3164-3763 bp Ori: CSS69968.1 Gene: ompX_3 Feature: domain Description: Ail_Lom Location: 3167-3761 bp Feature: domain Description: Ail_Lom Location: 3167-3761 bp Feature: gene Location: 3828-7181 bp Ori: CSS69994.1 Feature: domain Description: phage_tail_N Location: 3831-4020 bp Feature: domain Description: phage_tail_N Location: 3831-402 0 bp Feature: domain Description: phage_tail_N Location: 4035-4425 bp Feature: domain Description: phage_tail_N Location: 4035-442 5 bp Feature: domain Description: Collar Location: 6501-6639 bp Feature: domain Description: Collar Location: 6501-6639 bp Feature: gene Location: 8210-9838 bp Ori: CSS70016.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8525-9116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 852 5-9116 bp Feature: domain Description: TIR_2 Location: 9443-9776 bp Feature: domain Description: TIR_2 Location: 9443-9776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Collar (pfam07484), RVT-Retrons, TIR_2 (pfam13676)

Seq: CXET01000213.1 Shigella sonnei genome assembly 5417_3#3, scaffold ERS008188SCcontig000213, whole genome shotgun sequence (4736 bp)
Overview 1 RT 1: 545-4421 bp Neighborhood of RT #1 [545, 4591] ushA RVT-GII Feature: gene Location: 545-2164 bp Ori: CSS87748.1 Gene: ushA_2 Feature: domain Description: ushA Location: 560-2162 bp Feature: domain Description: ushA Location: 560-2162 bp Feature: gene Location: 2133-2318 bp Feature: gene Location: 3497-4591 bp Ori: CSS87798.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3764-4421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 764-4421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII

Seq: CXET01000195.1 Shigella sonnei genome assembly 5417_3#3, scaffold ERS008188SCcontig000195, whole genome shotgun sequence (5829 bp)
Overview 1 RT 1: 499-3720 bp Neighborhood of RT #1 [499, 3740] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 499-1188 bp Ori: CSS83888.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-1162 bp Feature: gene Location: 1203-1730 bp Ori: CSS83912.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1353 bp Feature: domain Description: GIIM Note: maturase Location: 1431-1653 bp Feature: domain Description: GIIM Note: maturase Location: 14 31-1653 bp Feature: gene Location: 2019-2504 bp Ori: CSS83935.1 Feature: domain Description: COG3547 Location: 2037-2469 bp Feature: domain Description: COG354 7 Location: 2037-24 69 bp Feature: gene Location: 2760-3740 bp Ori: CSS83954.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2937-3132 bp Feature: domain Description: sopB_N Location: 2937-3132 bp Feature: domain Description: ParB Location: 3345-3720 bp Feature: domain Description: ParB Location: 334 5-3720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)