myRT

myRT report for GCA_001249335.1_12830_1_37

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Seq: CWWY01000281.1 Shigella sonnei genome assembly 12830_1#37, scaffold ERS428541SCcontig000281, whole genome shotgun sequence (4177 bp)
Overview 1 RT 1: 267-4158 bp Neighborhood of RT #1 [267, 4160] RVT-GII ushA Feature: gene Location: 267-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1 1 91 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4160 bp Feature: domain Description: ushA Location: 2697-4158 bp Feature: domain Description: ushA Location: 2697-41 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWWY01000225.1 Shigella sonnei genome assembly 12830_1#37, scaffold ERS428541SCcontig000225, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Feature: gene Location: 2825-3805 bp Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002 -3197 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 3410-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)