myRT

myRT report for GCA_001249455.1_12844_1_58

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Seq: CWXG01000275.1 Shigella sonnei genome assembly 12844_1#58, scaffold ERS428562SCcontig000275, whole genome shotgun sequence (3233 bp)
Overview 1 RT 1: 1373-2547 bp Neighborhood of RT #1 [1373, 2547] RVT-GII DDE_Tnp_1 Feature: gene Location: 1373-1576 bp Ori: CSK44875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1481-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 481 -1 571 bp Feature: gene Location: 1902-2384 bp Ori: CSK44897.1 Feature: domain Description: DDE_Tnp_1 Location: 2073-2316 bp Feature: domain Description: DDE_Tnp_1 Location: 2073-231 6 bp Feature: gene Location: 2407-2547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWXG01000214.1 Shigella sonnei genome assembly 12844_1#58, scaffold ERS428562SCcontig000214, whole genome shotgun sequence (5155 bp)
Overview 1 RT 1: 267-4311 bp Neighborhood of RT #1 [267, 4313] RVT-GII ushA Feature: gene Location: 267-1361 bp Ori: CSK36248.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: gene Location: 2540-2725 bp Feature: gene Location: 2694-4313 bp Ori: CSK36291.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2709-4311 bp Feature: domain Description: ushA Location: 2 709-4311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CWXG01000202.1 Shigella sonnei genome assembly 12844_1#58, scaffold ERS428562SCcontig000202, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 2150-5365 bp Neighborhood of RT #1 [2150, 5391] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2150-3130 bp Ori: CSK34159.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2327-2522 bp Feature: domain Description: sopB_N Location: 23 27-2522 bp Feature: domain Description: ParB Location: 2735-3110 bp Feature: domain Description: ParB Location: 273 5-3 110 bp Feature: gene Location: 3386-3871 bp Ori: CSK34181.1 Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3 547 Location: 3 404-3 83 6 bp Feature: gene Location: 4160-4687 bp Ori: CSK34196.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-43 10 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 43 88-4610 bp Feature: gene Location: 4702-5391 bp Ori: CSK34216.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903 -53 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)