myRT

myRT report for GCA_001249535.1_8489_2_82

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Seq: CXLZ01000202.1 Shigella sonnei genome assembly 8489_2#82, scaffold ERS153594SCcontig000202, whole genome shotgun sequence (5364 bp)
Overview 1 RT 1: 1625-4840 bp Neighborhood of RT #1 [1625, 4866] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1625-2605 bp Ori: CTB41064.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 1802-1997 bp Feature: domain Description: sopB_N Location: 1 802-1 997 bp Feature: domain Description: ParB Location: 2210-2585 bp Feature: domain Description: ParB Location: 221 0-2585 bp Feature: gene Location: 2861-3346 bp Ori: CTB41073.1 Feature: domain Description: COG3547 Location: 2879-3311 bp Feature: domain Description: COG3547 Location: 2879-331 1 bp Feature: gene Location: 3635-4162 bp Ori: CTB41082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641 -3785 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: domain Description: GIIM Note: maturase Location: 3863-4085 bp Feature: gene Location: 4177-4866 bp Ori: CTB41090.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378-4840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXLZ01000214.1 Shigella sonnei genome assembly 8489_2#82, scaffold ERS153594SCcontig000214, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CTB42693.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CTB42719.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2 588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXLZ01000278.1 Shigella sonnei genome assembly 8489_2#82, scaffold ERS153594SCcontig000278, whole genome shotgun sequence (2777 bp)
Overview 1 RT 1: 1332-2506 bp Neighborhood of RT #1 [1332, 2506] RVT-GII DDE_Tnp_1 Feature: gene Location: 1332-1535 bp Ori: CTB49324.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440-153 0 bp Feature: gene Location: 1861-2343 bp Ori: CTB49341.1 Feature: domain Description: DDE_Tnp_1 Location: 2032-2275 bp Feature: domain Description: DDE_Tnp_1 Location: 203 2-2275 bp Feature: gene Location: 2366-2506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)