myRT

myRT report for GCA_001249735.1_8489_2_86

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Seq: CXMA01000195.1 Shigella sonnei genome assembly 8489_2#86, scaffold ERS153598SCcontig000195, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-3785 bp Neighborhood of RT #1 [564, 3805] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 564-1253 bp Ori: CTB19664.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Ori: CTB19679.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 2084-2569 bp Ori: CTB19693.1 Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Feature: gene Location: 2825-3805 bp Ori: CTB19707.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 3002-3197 bp Feature: domain Description: sopB_N Location: 3002-31 97 bp Feature: domain Description: ParB Location: 3410-3785 bp Feature: domain Description: ParB Location: 341 0-3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXMA01000212.1 Shigella sonnei genome assembly 8489_2#86, scaffold ERS153598SCcontig000212, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CTB21701.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CTB21732.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2 588-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXMA01000280.1 Shigella sonnei genome assembly 8489_2#86, scaffold ERS153598SCcontig000280, whole genome shotgun sequence (2803 bp)
Overview 1 RT 1: 272-1441 bp Neighborhood of RT #1 [272, 1446] DDE_Tnp_1 RVT-GII Feature: gene Location: 272-412 bp Feature: gene Location: 435-917 bp Ori: CTB28845.1 Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: gene Location: 1243-1446 bp Ori: CTB28860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 51-1441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII