myRT

myRT report for GCA_001249755.1_H14088031401

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Seq: CWTP01000001.1 Shigella sonnei genome assembly H14088031401, scaffold SCcontig000001, whole genome shotgun sequence (77697 bp)
Overview 1 RT 1: 13913-18349 bp Neighborhood of RT #1 [13913, 18354] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 13913-14104 bp Feature: gene Location: 14296-14952 bp Feature: gene Location: 15527-17428 bp Ori: CSF11691.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15794-16625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5794-1 6625 bp Feature: domain Description: Intron_maturas2 Location: 16739-16997 bp Feature: domain Description: Intron_maturas2 Location: 1 6739-1 6997 bp Feature: domain Description: HNHc Note: nucleases Location: 17171-17333 bp Feature: domain Description: HNHc Note: nucleases Location: 1 71 71 -1 7333 bp Feature: gene Location: 17623-18063 bp Ori: CSF11706.1 Gene: ssb_1 Feature: domain Description: PRK13732 Location: 17626-18061 bp Feature: domain Description: PRK1 3732 Location: 1 7626-1 8061 bp Feature: gene Location: 18121-18354 bp Ori: CSF11727.1 Gene: ykfF Feature: domain Description: DUF905 Location: 18151-18349 bp Feature: domain Description: DUF905 Location: 1 81 51 -1 8349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CWTP01000272.1 Shigella sonnei genome assembly H14088031401, scaffold SCcontig000272, whole genome shotgun sequence (3341 bp)
Overview 1 RT 1: 901-2492 bp Neighborhood of RT #1 [901, 2492] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 901-1257 bp Ori: CSG12126.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-12 31 bp Feature: gene Location: 1318-1521 bp Ori: CSG12139.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1426-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 6-1516 bp Feature: gene Location: 1613-2329 bp Ori: CSG12152.1 Feature: domain Description: DDE_Tnp_1 Location: 1619-2261 bp Feature: domain Description: DDE_Tnp_1 Location: 1619-2 2 61 bp Feature: gene Location: 2352-2492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: CWTP01000209.1 Shigella sonnei genome assembly H14088031401, scaffold SCcontig000209, whole genome shotgun sequence (5392 bp)
Overview 1 RT 1: 499-4925 bp Neighborhood of RT #1 [499, 4948] RVT-GII RVT-GII GIIM sopB_N ParB HTH_54 BcsQ Feature: gene Location: 499-1188 bp Ori: CSG05848.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-1162 bp Feature: gene Location: 1203-1730 bp Ori: CSG05861.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-13 53 bp Feature: domain Description: GIIM Note: maturase Location: 1431-1653 bp Feature: domain Description: GIIM Note: maturase Location: 143 1-1653 bp Feature: gene Location: 2769-3749 bp Ori: CSG05875.1 Gene: sopB Feature: domain Description: sopB_N Location: 2946-3141 bp Feature: domain Description: sopB_N Location: 2946-3 141 bp Feature: domain Description: ParB Location: 3354-3729 bp Feature: domain Description: ParB Location: 3 3 54-3 729 bp Feature: gene Location: 3749-4948 bp Ori: CSG05894.1 Gene: parA Feature: domain Description: HTH_54 Location: 3791-4064 bp Feature: domain Description: HTH_54 Location: 3 791-4064 bp Feature: domain Description: BcsQ Location: 4079-4925 bp Feature: domain Description: BcsQ Location: 4079-4925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), sopB_N (cd16394), ParB (smart00470), HTH_54 (pfam18607), BcsQ (COG1192)

Seq: CWTP01000217.1 Shigella sonnei genome assembly H14088031401, scaffold SCcontig000217, whole genome shotgun sequence (5032 bp)
Overview 1 RT 1: 173-4484 bp Neighborhood of RT #1 [173, 4486] Tra5 RVT-GII ushA Feature: gene Location: 173-394 bp Ori: CSG06730.1 Feature: domain Description: Tra5 Location: 185-377 bp Feature: domain Description: Tra5 Location: 185-377 bp Feature: gene Location: 440-1534 bp Ori: CSG06747.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1364 bp Feature: gene Location: 2713-2898 bp Feature: gene Location: 2867-4486 bp Ori: CSG06778.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2882-4484 bp Feature: domain Description: ushA Location: 2882-4 4 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)