myRT

myRT report for GCA_001249955.1_8290_5_9

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Seq: CXLY01000207.1 Shigella sonnei genome assembly 8290_5#9, scaffold ERS127225SCcontig000207, whole genome shotgun sequence (5394 bp)
Overview 1 RT 1: 1624-4839 bp Neighborhood of RT #1 [1624, 4865] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 1624-2604 bp Ori: CTB39657.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 1801-1996 bp Feature: domain Description: sopB_N Location: 1 801 -1 996 bp Feature: domain Description: ParB Location: 2209-2584 bp Feature: domain Description: ParB Location: 2209-2584 bp Feature: gene Location: 2860-3345 bp Ori: CTB39677.1 Feature: domain Description: COG3547 Location: 2878-3310 bp Feature: domain Description: COG3547 Location: 2878-331 0 bp Feature: gene Location: 3634-4161 bp Ori: CTB39699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3640-3784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3640-3784 bp Feature: domain Description: GIIM Note: maturase Location: 3862-4084 bp Feature: domain Description: GIIM Note: maturase Location: 3862-4084 bp Feature: gene Location: 4176-4865 bp Ori: CTB39721.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4377-4839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4377-4839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXLY01000290.1 Shigella sonnei genome assembly 8290_5#9, scaffold ERS127225SCcontig000290, whole genome shotgun sequence (2764 bp)
Overview 1 RT 1: 272-1441 bp Neighborhood of RT #1 [272, 1446] DDE_Tnp_1 RVT-GII Feature: gene Location: 272-412 bp Feature: gene Location: 435-917 bp Ori: CTB51189.1 Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: domain Description: DDE_Tnp_1 Location: 606-849 bp Feature: gene Location: 1243-1446 bp Ori: CTB51211.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351-1441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXLY01000209.1 Shigella sonnei genome assembly 8290_5#9, scaffold ERS127225SCcontig000209, whole genome shotgun sequence (5058 bp)
Overview 1 RT 1: 199-4510 bp Neighborhood of RT #1 [199, 4512] Tra5 RVT-GII ushA Feature: gene Location: 199-420 bp Ori: CTB39947.1 Feature: domain Description: Tra5 Location: 211-403 bp Feature: domain Description: Tra5 Location: 211-403 bp Feature: gene Location: 466-1560 bp Ori: CTB39962.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 3 -13 90 bp Feature: gene Location: 2739-2924 bp Feature: gene Location: 2893-4512 bp Ori: CTB39994.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2908-4510 bp Feature: domain Description: ushA Location: 2908-4510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)