myRT

myRT report for GCA_001249975.1_5236_2_7

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Seq: CXBY01000206.1 Shigella sonnei genome assembly 5236_2#7, scaffold ERS009812SCcontig000206, whole genome shotgun sequence (5683 bp)
Overview 1 RT 1: 2028-5184 bp Neighborhood of RT #1 [2028, 5210] PRK09183 COG4584 RVT-GII Feature: gene Location: 2028-2825 bp Ori: CSP56792.1 Feature: domain Description: PRK09183 Location: 2040-2775 bp Feature: domain Description: PRK091 83 Location: 2040-2775 bp Feature: gene Location: 2825-3997 bp Ori: CSP56802.1 Feature: domain Description: COG4584 Location: 2828-3665 bp Feature: domain Description: COG4584 Location: 2828-3665 bp Feature: gene Location: 4521-5210 bp Ori: CSP56821.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4722-5184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4722-51 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT-GII

Seq: CXBY01000276.1 Shigella sonnei genome assembly 5236_2#7, scaffold ERS009812SCcontig000276, whole genome shotgun sequence (3212 bp)
Overview 1 RT 1: 787-1956 bp Neighborhood of RT #1 [787, 1961] DDE_Tnp_1 RVT-GII Feature: gene Location: 787-927 bp Feature: gene Location: 950-1432 bp Ori: CSP64486.1 Feature: domain Description: DDE_Tnp_1 Location: 1121-1364 bp Feature: domain Description: DDE_Tnp_1 Location: 112 1-1364 bp Feature: gene Location: 1758-1961 bp Ori: CSP64497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXBY01000224.1 Shigella sonnei genome assembly 5236_2#7, scaffold ERS009812SCcontig000224, whole genome shotgun sequence (4597 bp)
Overview 1 RT 1: 406-4282 bp Neighborhood of RT #1 [406, 4452] ushA RVT-GII Feature: gene Location: 406-2025 bp Ori: CSP59192.1 Gene: ushA_2 Feature: domain Description: ushA Location: 421-2023 bp Feature: domain Description: ushA Location: 421-2023 bp Feature: gene Location: 1994-2179 bp Feature: gene Location: 3358-4452 bp Ori: CSP59218.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3625-4282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 625-4282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII