myRT

myRT report for GCA_001250075.1_8489_2_92

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Seq: CXMI01000205.1 Shigella sonnei genome assembly 8489_2#92, scaffold ERS153604SCcontig000205, whole genome shotgun sequence (5966 bp)
Overview 1 RT 1: 489-3710 bp Neighborhood of RT #1 [489, 3730] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 489-1178 bp Ori: CTB75000.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1 1 52 bp Feature: gene Location: 1193-1720 bp Ori: CTB75015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1199-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 99-1 343 bp Feature: domain Description: GIIM Note: maturase Location: 1421-1643 bp Feature: domain Description: GIIM Note: maturase Location: 1 421 -1 643 bp Feature: gene Location: 2009-2494 bp Ori: CTB75027.1 Feature: domain Description: COG3547 Location: 2027-2459 bp Feature: domain Description: COG3547 Location: 2027-2459 bp Feature: gene Location: 2750-3730 bp Ori: CTB75041.1 Gene: sopB_3 Feature: domain Description: sopB_N Location: 2927-3122 bp Feature: domain Description: sopB_N Location: 2927-31 22 bp Feature: domain Description: ParB Location: 3335-3710 bp Feature: domain Description: ParB Location: 3335-371 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXMI01000278.1 Shigella sonnei genome assembly 8489_2#92, scaffold ERS153604SCcontig000278, whole genome shotgun sequence (3352 bp)
Overview 1 RT 1: 843-2012 bp Neighborhood of RT #1 [843, 2017] DDE_Tnp_1 RVT-GII Feature: gene Location: 843-983 bp Feature: gene Location: 1006-1488 bp Ori: CTB83746.1 Feature: domain Description: DDE_Tnp_1 Location: 1177-1420 bp Feature: domain Description: DDE_Tnp_1 Location: 1177-142 0 bp Feature: gene Location: 1814-2017 bp Ori: CTB83755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1922-2012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 2 -2 012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: CXMI01000215.1 Shigella sonnei genome assembly 8489_2#92, scaffold ERS153604SCcontig000215, whole genome shotgun sequence (5233 bp)
Overview 1 RT 1: 722-5018 bp Neighborhood of RT #1 [722, 5035] ushA RVT-GII Tra5 Feature: gene Location: 722-2341 bp Ori: CTB76308.1 Gene: ushA_2 Feature: domain Description: ushA Location: 737-2339 bp Feature: domain Description: ushA Location: 73 7-23 3 9 bp Feature: gene Location: 2310-2495 bp Feature: gene Location: 3674-4768 bp Ori: CTB76344.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3941-4598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 941-4598 bp Feature: gene Location: 4814-5035 bp Ori: CTB76355.1 Feature: domain Description: Tra5 Location: 4826-5018 bp Feature: domain Description: Tra5 Location: 4826-5018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)