myRT

myRT report for GCA_001250375.1_5417_2_3

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Seq: CXEG01000205.1 Shigella sonnei genome assembly 5417_2#3, scaffold ERS008176SCcontig000205, whole genome shotgun sequence (5028 bp)
Overview 1 RT 1: 146-4190 bp Neighborhood of RT #1 [146, 4192] RVT-GII ushA Feature: gene Location: 146-1240 bp Ori: CSS19618.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3-1 070 bp Feature: gene Location: 2419-2604 bp Feature: gene Location: 2573-4192 bp Ori: CSS19673.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2588-4190 bp Feature: domain Description: ushA Location: 2588-41 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ushA (PRK09558)

Seq: CXEG01000193.1 Shigella sonnei genome assembly 5417_2#3, scaffold ERS008176SCcontig000193, whole genome shotgun sequence (5807 bp)
Overview 1 RT 1: 2091-5306 bp Neighborhood of RT #1 [2091, 5332] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2091-3071 bp Ori: CSS16872.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2268-2463 bp Feature: domain Description: sopB_N Location: 2 2 68-2 463 bp Feature: domain Description: ParB Location: 2676-3051 bp Feature: domain Description: ParB Location: 2 676-3051 bp Feature: gene Location: 3327-3812 bp Ori: CSS16900.1 Feature: domain Description: COG3547 Location: 3345-3777 bp Feature: domain Description: COG3547 Location: 3345-3777 bp Feature: gene Location: 4101-4628 bp Ori: CSS16926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4107-4251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4107-42 51 bp Feature: domain Description: GIIM Note: maturase Location: 4329-4551 bp Feature: domain Description: GIIM Note: maturase Location: 432 9-4551 bp Feature: gene Location: 4643-5332 bp Ori: CSS16955.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844-5306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844-5306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CXEG01000259.1 Shigella sonnei genome assembly 5417_2#3, scaffold ERS008176SCcontig000259, whole genome shotgun sequence (3279 bp)
Overview 1 RT 1: 814-1983 bp Neighborhood of RT #1 [814, 1988] DDE_Tnp_1 RVT-GII Feature: gene Location: 814-954 bp Feature: gene Location: 977-1459 bp Ori: CSS30100.1 Feature: domain Description: DDE_Tnp_1 Location: 1148-1391 bp Feature: domain Description: DDE_Tnp_1 Location: 1148-13 91 bp Feature: gene Location: 1785-1988 bp Ori: CSS30115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893 -1983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII