myRT

myRT report for GCA_001250635.1_8290_5_12

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Seq: CXLN01000211.1 Shigella sonnei genome assembly 8290_5#12, scaffold ERS127228SCcontig000211, whole genome shotgun sequence (5930 bp)
Overview 1 RT 1: 540-3761 bp Neighborhood of RT #1 [540, 3781] RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Feature: gene Location: 540-1229 bp Ori: CTA46576.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 -1 203 bp Feature: gene Location: 1244-1771 bp Ori: CTA46581.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 250-1 394 bp Feature: domain Description: GIIM Note: maturase Location: 1472-1694 bp Feature: domain Description: GIIM Note: maturase Location: 1 472-1 694 bp Feature: gene Location: 2060-2545 bp Ori: CTA46586.1 Feature: domain Description: COG3547 Location: 2078-2510 bp Feature: domain Description: COG3547 Location: 2078-251 0 bp Feature: gene Location: 2801-3781 bp Ori: CTA46591.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2978-3173 bp Feature: domain Description: sopB_N Location: 2978-31 73 bp Feature: domain Description: ParB Location: 3386-3761 bp Feature: domain Description: ParB Location: 3386-3761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470)

Seq: CXLN01000217.1 Shigella sonnei genome assembly 8290_5#12, scaffold ERS127228SCcontig000217, whole genome shotgun sequence (5280 bp)
Overview 1 RT 1: 769-5065 bp Neighborhood of RT #1 [769, 5082] ushA RVT-GII Tra5 Feature: gene Location: 769-2388 bp Ori: CTA46842.1 Gene: ushA_2 Feature: domain Description: ushA Location: 784-2386 bp Feature: domain Description: ushA Location: 784-2 386 bp Feature: gene Location: 2357-2542 bp Feature: gene Location: 3721-4815 bp Ori: CTA46854.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3988-4645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3988-4645 bp Feature: gene Location: 4861-5082 bp Ori: CTA46862.1 Feature: domain Description: Tra5 Location: 4873-5065 bp Feature: domain Description: Tra5 Location: 4873-5065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, Tra5 (COG2801)

Seq: CXLN01000272.1 Shigella sonnei genome assembly 8290_5#12, scaffold ERS127228SCcontig000272, whole genome shotgun sequence (3364 bp)
Overview 1 RT 1: 852-2021 bp Neighborhood of RT #1 [852, 2026] DDE_Tnp_1 RVT-GII Feature: gene Location: 852-992 bp Feature: gene Location: 1015-1497 bp Ori: CTA49328.1 Feature: domain Description: DDE_Tnp_1 Location: 1186-1429 bp Feature: domain Description: DDE_Tnp_1 Location: 1186-1429 bp Feature: gene Location: 1823-2026 bp Ori: CTA49335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 1-2021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII