myRT

myRT report for GCA_001250715.1_5236_1_10

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Seq: CXBL01000315.1 Shigella sonnei genome assembly 5236_1#10, scaffold ERS009803SCcontig000315, whole genome shotgun sequence (1816 bp)
Overview 1 RT 1: 35-1226 bp Neighborhood of RT #1 [35, 1396] Tra5 RVT-GII Feature: gene Location: 35-256 bp Ori: CSP14233.1 Feature: domain Description: Tra5 Location: 47-239 bp Feature: domain Description: Tra5 Location: 47-239 bp Feature: gene Location: 302-1396 bp Ori: CSP14246.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1 226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII

Seq: CXBL01000352.1 Shigella sonnei genome assembly 5236_1#10, scaffold ERS009803SCcontig000352, whole genome shotgun sequence (1270 bp)
Overview 1 RT 1: 455-1118 bp Neighborhood of RT #1 [455, 1144] RVT-GII Feature: gene Location: 455-1144 bp Ori: CSP16431.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656-1118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CXBL01000297.1 Shigella sonnei genome assembly 5236_1#10, scaffold ERS009803SCcontig000297, whole genome shotgun sequence (2431 bp)
Overview 1 RT 1: 787-2352 bp Neighborhood of RT #1 [787, 2378] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 787-927 bp Feature: gene Location: 950-1432 bp Ori: CSP12932.1 Feature: domain Description: DDE_Tnp_1 Location: 1121-1364 bp Feature: domain Description: DDE_Tnp_1 Location: 1121-13 64 bp Feature: gene Location: 1758-1961 bp Ori: CSP12947.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: gene Location: 2022-2378 bp Ori: CSP12962.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 1-23 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII