myRT

myRT report for GCA_001250835.1_5236_1_9

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Seq: CXBQ01000206.1 Shigella sonnei genome assembly 5236_1#9, scaffold ERS009802SCcontig000206, whole genome shotgun sequence (5754 bp)
Overview 1 RT 1: 1759-5539 bp Neighborhood of RT #1 [1759, 5628] RVT-GII GIIM HNHc RsmC Feature: gene Location: 1759-1989 bp Feature: gene Location: 3634-3831 bp Feature: gene Location: 3779-5053 bp Ori: CSP55265.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782-4364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3782-4364 bp Feature: domain Description: GIIM Note: maturase Location: 4415-4649 bp Feature: domain Description: GIIM Note: maturase Location: 441 5-4649 bp Feature: domain Description: HNHc Note: nucleases Location: 4859-5018 bp Feature: domain Description: HNHc Note: nucleases Location: 4859-501 8 bp Feature: gene Location: 5168-5392 bp Feature: gene Location: 5392-5628 bp Ori: CSP55299.1 Feature: domain Description: RsmC Location: 5404-5539 bp Feature: domain Description: RsmC Location: 5404-5539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RsmC (COG2813)

Seq: CXBQ01000077.1 Shigella sonnei genome assembly 5236_1#9, scaffold ERS009802SCcontig000077, whole genome shotgun sequence (19420 bp)
Overview 1 RT 1: 158-5015 bp Neighborhood of RT #1 [158, 5041] DDE_Tnp_1 RVT-GII HTH_23 HTH_33 DDE_3 stp Feature: gene Location: 158-298 bp Feature: gene Location: 321-803 bp Ori: CSP22360.1 Feature: domain Description: DDE_Tnp_1 Location: 492-735 bp Feature: domain Description: DDE_Tnp_1 Location: 492 -735 bp Feature: gene Location: 1129-1332 bp Ori: CSP22379.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1237-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 37-132 7 bp Feature: gene Location: 2655-3686 bp Ori: CSP22397.1 Feature: domain Description: HTH_23 Location: 2733-2874 bp Feature: domain Description: HTH_2 3 Location: 2 733-2 874 bp Feature: domain Description: HTH_33 Location: 2979-3126 bp Feature: domain Description: HTH_33 Location: 2 979-312 6 bp Feature: domain Description: DDE_3 Location: 3186-3603 bp Feature: domain Description: DDE_3 Location: 3186-3603 bp Feature: gene Location: 3812-5041 bp Ori: CSP22416.1 Gene: yqeG Feature: domain Description: stp Location: 3827-5015 bp Feature: domain Description: stp Location: 382 7-5015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), stp (TIGR00814)

Seq: CXBQ01000220.1 Shigella sonnei genome assembly 5236_1#9, scaffold ERS009802SCcontig000220, whole genome shotgun sequence (4763 bp)
Overview 1 RT 1: 59-4370 bp Neighborhood of RT #1 [59, 4372] Tra5 RVT-GII ushA Feature: gene Location: 59-280 bp Ori: CSP57087.1 Feature: domain Description: Tra5 Location: 71-263 bp Feature: domain Description: Tra5 Location: 71-263 bp Feature: gene Location: 326-1420 bp Ori: CSP57103.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593-1250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593 -1250 bp Feature: gene Location: 2599-2784 bp Feature: gene Location: 2753-4372 bp Ori: CSP57132.1 Gene: ushA_2 Feature: domain Description: ushA Location: 2768-4370 bp Feature: domain Description: ushA Location: 2768-43 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: CXBQ01000207.1 Shigella sonnei genome assembly 5236_1#9, scaffold ERS009802SCcontig000207, whole genome shotgun sequence (5745 bp)
Overview 1 RT 1: 2050-5265 bp Neighborhood of RT #1 [2050, 5291] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 2050-3030 bp Ori: CSP55405.1 Gene: sopB_2 Feature: domain Description: sopB_N Location: 2227-2422 bp Feature: domain Description: sopB_N Location: 2227-24 22 bp Feature: domain Description: ParB Location: 2635-3010 bp Feature: domain Description: ParB Location: 2635-3010 bp Feature: gene Location: 3286-3771 bp Ori: CSP55420.1 Feature: domain Description: COG3547 Location: 3304-3736 bp Feature: domain Description: COG354 7 Location: 3304 -3736 bp Feature: gene Location: 4060-4587 bp Ori: CSP55434.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4066-4210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 066-4 210 bp Feature: domain Description: GIIM Note: maturase Location: 4288-4510 bp Feature: domain Description: GIIM Note: maturase Location: 4 288-4 510 bp Feature: gene Location: 4602-5291 bp Ori: CSP55449.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4803-5265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 803-5265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)